SNP技术及其在作物研究上的应用
Single Nucleotide Polymorphism and Its Utilization in Plant Research
DOI: 10.12677/HJAS.2014.43010, PDF, HTML,  被引量 下载: 3,284  浏览: 14,267  科研立项经费支持
作者: 石莹, 李穆, 何平, 李富生:云南农业大学农学与生物技术学院,昆明
关键词: SNP分子标记作物SNP Molecular Markers Crops
摘要: SNP(单核苷酸多态性)是最新发展起来的第三代分子标记技术,具有分布广、多态信息量大、易于检测和统计分析等特点。目前,SNP技术在水稻、玉米、大豆等作物研究中应用较多。本文综述该技术在这些作物的遗传标记、分子标记辅助选择、构建高密度遗传连锁图谱、绘制EST图谱等方面的研究进展。
Abstract: SNP (single nucleotide polymorphisms) had become the third generation molecular maker technology in recent years. It had the characteristics of wide distribution, the polymorphism information content big, easy detection and statistics analysis etc. In crops research, SNP had many applications, such as genetic marker, molecular marker assisted selection (MAS), construction of genetic linkage map with high density, mapping expressed sequence tag (EST), and so on.
文章引用:石莹, 李穆, 何平, 李富生. SNP技术及其在作物研究上的应用[J]. 农业科学, 2014, 4(3): 60-65. http://dx.doi.org/10.12677/HJAS.2014.43010

参考文献

[1] 许阳, 李东潮, 李晓丽, 等 (2004) 单核苷酸多态性在大豆育种中的应用. 安徽农业科学, 5, 1000-1020.
[2] 程备久, 凌杏元 (1994) 利用RFLP进行数量基因定位及效应分析对的原理和方法. 生物数学学报, 5, 200-206.
[3] 曹永国, 王国英, 王守才, 等 (1999) 玉米RFLP遗传图谱的构建及矮生基因定位. 科学通报, 40, 2178-2182.
[4] 孙红霞, 杜玮南, 方福德 (2000) 单核苷酸多态性研究进展. 中国医学科学院学报, 4, 392-394.
[5] 刘惠民, 杜春芳, 李润植, 等 (2003) 单核苷酸多态性在作物遗传及改良中的应用. 遗传, 6, 735-739.
[6] Liu, W.Q. and He, L. (1998) SNP: Tracing new blueprint for human genome. Herrditas, 20, 38-40.
[7] 王艳芳 (2007) 针茅属植物水孔蛋白基因多态性分析及分子进化的研究. 硕士论文, 内蒙古农业大学, 呼和浩特.
[8] Selinger, D.A., Handler, C. and Bolivia, V.L.B. (2001) An allele of them aizeb1gene with variable expression, contains a high copy retro transposon related sequence immediately up stream. Plant Physiology, 1, 1363-1379.
[9] 曾燕如, 黄敏仁, 王明麻 (2003) 一种新的分子标记——单核苷酸多态(SNP). 南京林业大学学报, 3, 84-88.
[10] Rafalski, A. (2002) Applications of single nucleotide polymorphisms in crop genetics. Current Opinion in Plant Biotechnology, 5, 94-100.
[11] Wang, D.G., Fan, J.B. and Siao, C.J. (1998) Large sale identification, mapping, and genotype of single nucleotide polymorphism in the human genome. Science, 280, 1077-1082.
[12] Gottgens, B., Barton, L.M., Gilbert, J.G., et al. (2000) Analysis of vertebrate SCL loci identifies conserved enhancers. Nature Biotechnology, 18, 181-186.
[13] Loots, G.G., Locksley, R.M., Blankespoor, C.M., et al. (2000) Identification of a coordinate regulator of interleukins 4, 13 and 5 by cross-species sequence comparisons. Science, 288, 136-140.
[14] Tao, H., Cox, D.R. and Frazer, K.A. (2006) Allele-specific KRTI expression is a complex trait. PLOS Genetics, 2, 93.
[15] 刘传光, 张桂全 (2006) 水稻单核苷酸多态性及其应用. 遗传, 28, 737-744.
[16] Nasu, S., Suzuki, J., Ohta, R., Hasegawa, K., et al. (2002) Search for and analysis of single nucleotide polymorphisms( SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Research, 9, 163-171.
[17] Yang, W.C., Bai, X.D., Kabelka, E., et al. (2004) Discovery of single nucleotide polymorphisms in Lycoper sicones culentum by computer aided analysis of expressed sequence tags. Molecular Breeding, 14, 21-34.
[18] Bundock, C., Christopher, T., Eggler, P., et al. (2003) Single nucleotide polymorphisms in cytochrome P450 genes from barley. Theoretical and Applied Genetics, 106, 676-682.
[19] Phillips, R.L. and Vasil, I.K. (2001) DNA-based markers in plants. Knuckler Academic Publishers, Dordrecht.
[20] Powell, W., Morgante, M., Andre, C., et al. (1996) The comparison of RFLP, RAPD, AFLP and SSR (micro-satellite) markers for germ plasm analysis. Molecular Breeding, 2, 225-238.
[21] Viard, F., Franck, P., Dubois, M.P., et al. (1998) Variation of micro-satellite size homoplasy across electro morphs, loci, and populations in three invertebrate species. Journal of Molecular Evolution, 47, 42-51.
[22] Taramino, G. and Tingey, S. (1996) Simple sequence repeats for germ plasm analysis and mapping in maize. Genome, 39, 277-287.
[23] 任启军 (2004) 基于棉花微卫星序列的SNP变异和系统进化. 硕士论文, 南京农业大学, 南京.
[24] 梁惠珍, 李卫东, 王辉, 等 (2004) SNPs在大豆等作物遗传及改良中的应用. 农业生物技术科学, 5, 37-53.
[25] 郑璐璐 (2008) SNAP分子标记检测玉米Ael, Sul, D9, ZmRap基因多态性. 硕士论文, 华中师范大学, 武汉.
[26] 聂庆华, 张细权, 雷明明 (2003) 单核苷酸多态性及其在鸡QTL定位上的应用. 遗传, 6, 729-734.
[27] Hayashi, K., Hashimoto, N., Daigen, M., et al. (2004) Development of PCR-based SNP markers for rice blast resistance genes at the piz locus. Theoretical and Applied Genetics, 108, 1212-1220.
[28] Huang, X., Wei, X., Sang, T., et al. (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. Nature Genetics, 42, 961-969.
[29] Huang, X., Zhao, Y., Wei, X., et al. (2012) Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nature Genetics, 44, 32-41.
[30] 郝岗平, 杨清, 吴忠义, 等 (2004) 植物的单核苷酸多态性及其在作物遗传育种中的应用. 植物学通报, 5, 618-624.
[31] Meyers, B.C., Tingey, S.V. and Morgante, M. (2001) Abundance distribution and transcriptional activity of repetitive elements in the maize genome. Genome Research, 11, 1660-1676.
[32] 王萱 (2008) 玉米直链淀粉扩充基因ae SNP位点查找及ae基因对有关性状的影响分析. 硕士论文, 甘肃农业大学, 兰州.
[33] Bhattramakki, D., Dolan, M., Hanafey, M., et al. (2002) Insertion deletion polymorphisms in 3’regions of maize genes occur frequently and can be used as highly informative genetic markers. Plant Molecular Biology, 48, 537-547.
[34] Useche, F., Morgant, M., Hanafey, M., et al. (2001) Computer Detection of Single Nucleotide Polymorphisms (SNP) in Maize ESTs. Plant and Animal Genome, IX, 333.
[35] 唐立群, 肖层林, 王伟平 (2012) SNP分子标记的研究及其应用进展. 中国农学通报, 12, 154-158.