[1]
|
Lindberg, J. and Lundeberg, J. (2010) The Plasticity of the Mammalian Transcriptome. Genomics, 95, 1-6.
https://doi.org/10.1016/j.ygeno.2009.08.010
|
[2]
|
Mortazavi, A., Williams, B.A., McCue, K., et al. (2008) Mapping and Quan-tifying Mammalian Transcriptomes by RNA-Seq. Nature Methods, 5, 621-628. https://doi.org/10.1038/nmeth.1226
|
[3]
|
Qian, X., Ba, Y., Zhuang, Q., et al. (2014) RNA-Seq Technology and Its Application in Fish Transcriptomics. Omics, 18, 98-110. https://doi.org/10.1089/omi.2013.0110
|
[4]
|
Robalino, J., Almeida, J.S., McKillen, D., et al. (2007) Insights into the Immune Transcriptome of the Shrimp Litopenaeus vannamei: Tissue-Specific Expression Profiles and Transcriptomic Responses to Immune Challenge. Physiological Genomics, 29, 44-56. https://doi.org/10.1152/physiolgenomics.00165.2006
|
[5]
|
Pongsomboon, S., Tang, S., Boonda, S., et al. (2008) Differentially Expressed Genes in Penaeus monodon Hemocytes Following Infection with Yellow Head Virus. BMB Reports, 41, 670-677.
https://doi.org/10.5483/BMBRep.2008.41.9.670
|
[6]
|
Brady, P., Elizur, A., Cummins, S.F., et al. (2013) Differential Expression Microarrays Reveal Candidate Genes Potentially Associated with Reproductive Dysfunction of Captive-Reared Prawn Penaeus monodon. Aquaculture, 400-401, 14-28. https://doi.org/10.1016/j.aquaculture.2013.02.038
|
[7]
|
Pongsomboon, S., Tang, S., Boonda, S., et al. (2011) A cDNA Microarray Approach for Analyzing Transcriptional Changes in Penaeus monodon after Infection by Pathogens. Fish & Shellfish Immunology, 30, 439-446.
https://doi.org/10.1016/j.fsi.2010.10.015
|
[8]
|
Seear, P.J., Tarling, G.A., Burns, G., et al. (2010) Differential Gene Expression during the Moult Cycle of Antarctic Krill (Euphausia superba). BMC Genomics, 11, 582. https://doi.org/10.1186/1471-2164-11-582
|
[9]
|
Lehnert, S., Wilson, K., Byrne, K., et al. (1999) Tissue-Specific Expressed Sequence Tags from the Black Tiger Shrimp Penaeus monodon. Marine Biotechnology (NY), 1, 465-476. https://doi.org/10.1007/PL00011803
|
[10]
|
Gross, P.S., Bartlett, T.C., Browdy, C.L., et al. (2001) Immune Gene Discovery by Expressed Sequence Tag Analysis of Hemocytes and Hepatopancreas in the Pacific White Shrimp, Litopenaeus vannamei, and the Atlantic White Shrimp, L. setiferus. Developmental & Comparative Immunology, 25, 565-577.
https://doi.org/10.1016/S0145-305X(01)00018-0
|
[11]
|
Supungul, P., Klinbunga, S., Pichyangkura, R., et al. (2002) Identification of Immune-Related Genes in Hemocytes of Black Tiger Shrimp (Penaeus monodon). Marine Biotechnology, 4, 487-494.
https://doi.org/10.1007/s10126-002-0043-8
|
[12]
|
Rojtinnakorn, J., Hirono, I., Itami, T., et al. (2002) Gene Expression in Hae-mocytes of Kuruma Prawn, Penaeus japonicus, in Response to Infection with WSSV by EST Approach. Fish & Shellfish Immunology, 13, 69-83.
https://doi.org/10.1006/fsim.2001.0382
|
[13]
|
O’Leary, N.A., Trent, H.F., Robalino, J., et al. (2006) Analysis of Multiple Tis-sue-Specific cDNA Libraries from the Pacific Whiteleg Shrimp, Litopenaeus vannamei. Integrative and Comparative Biology, 46, 931-939.
https://doi.org/10.1093/icb/icl006
|
[14]
|
Yamano, K. and Unuma, T. (2006) Expressed Sequence Tags from Eyestalk of Kuruma Prawn, Marsupenaeus japonicus. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 143, 155-161.
https://doi.org/10.1016/j.cbpa.2005.11.005
|
[15]
|
de la Vega, E., Degnan, B.M., Hall, M.R., et al. (2007) Differential Expression of Immune-Related Genes and Transposable Elements in Black Tiger Shrimp (Penaeus monodon) Exposed to a Range of Environ-mental Stressors. Fish & Shellfish Immunology, 23, 1072-1088. https://doi.org/10.1016/j.fsi.2007.05.001
|
[16]
|
Clavero-Salas, A., Sotelo-Mundo, R.R., Gollas-Galván, T., et al. (2007) Transcriptome Analysis of Gills from the White Shrimp Litopenaeus vannamei Infected with White Spot Syndrome Virus. Fish and Shellfish Immunology, 23, 459-472. https://doi.org/10.1016/j.fsi.2007.01.010
|
[17]
|
James, R., Thampuran, N., Lalitha, K.V., et al. (2010) Differential Gene Expres-sion Profile of the Hepatopancreas of White Spot Syndrome Virus Infected Fenneropenaeus indicus by Suppression Subtractive Hy-bridization. Fish and Shellfish Immunology, 29, 884-889. https://doi.org/10.1016/j.fsi.2010.07.029
|
[18]
|
Grabherr, M.G., Haas, B.J., Yassour, M., et al. (2011) Full-Length Transcriptome Assembly from RNA-Seq Data without a Reference Genome. Nature Biotechnology, 29, 644. https://doi.org/10.1038/nbt.1883
|
[19]
|
Chen, X., Zeng, D., Chen, X., et al. (2013) Transcriptome Anal-ysis of Litopenaeus vannamei in Response to White Spot Syndrome Virus Infection. PLoS ONE, 8, e73218. https://doi.org/10.1371/journal.pone.0073218
|
[20]
|
Guo, H., Ye, C.X., Wang, A.L., et al. (2013) Trascriptome Analysis of the Pacific White Shrimp Litopenaeus vannamei Exposed to Nitrite by RNA-Seq. Fish and Shellfish Immunology, 35, 2008-2016.
https://doi.org/10.1016/j.fsi.2013.09.019
|
[21]
|
Zeng, D., Chen, X., Xie, D., et al. (2013) Transcriptome Analysis of Pacific White Shrimp (Litopenaeus vannamei) Hepatopancreas in Response to Taura Syndrome Virus (TSV) Experimental Infection. PLoS ONE, 8, e57515.
https://doi.org/10.1371/journal.pone.0057515
|
[22]
|
Wei, J., Zhang, X., Yu, Y., et al. (2014) Comparative Transcriptomic Cha-racterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei. PLoS ONE, 9, e106201. https://doi.org/10.1371/journal.pone.0106201
|
[23]
|
Sun, Y., Li, F., Sun, Z., et al. (2014) Transcriptome Analysis of the Initial Stage of Acute WSSV Infection Caused by Temperature Change. PLoS ONE, 9, e90732. https://doi.org/10.1371/journal.pone.0090732
|
[24]
|
Gao, Y., Zhang, X., Wei, J., et al. (2015) Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei. PLoS ONE, 10, e0144350. https://doi.org/10.1371/journal.pone.0144350
|
[25]
|
Wang, X., Wang, S., Li, C., et al. (2015) Molecular Pathway and Gene Responses of the Pacific White Shrimp Litopenaeus vannamei to Acute Low Salinity Stress. Journal of Shellfish Research, 34, 1037-1048.
https://doi.org/10.2983/035.034.0330
|
[26]
|
Rao, R., Bhassu, S., Bing, R.Z.Y., et al. (2016) A Transcriptome Study on Macro-brachium rosenbergii Hepatopancreas Experimentally Challenged with White Spot Syndrome Virus (WSSV). Journal of Invertebrate Pathology, 136, 10-22. https://doi.org/10.1016/j.jip.2016.01.002
|
[27]
|
Elizondo-Reyna, E., Medina-González, R., Nieto-López, M.G., et al. (2016) Consumption of Ulva clathrata as a Dietary Supplement Stimulates Immune and Lipid Metabolism Genes in Pacific White Shrimp Litopenaeus vannamei. Journal of Applied Phycology, 28, 3667-3677. https://doi.org/10.1007/s10811-016-0889-1
|
[28]
|
Saetan, U., Sangket, U., Deachamag, P., et al. (2016) Ovarian Transcriptome Analysis of Vitellogenic and Non-Vitellogenic Female Banana Shrimp (Fenneropenaeus Merguiensis). PLoS ONE, 11, e0164724.
https://doi.org/10.1371/journal.pone.0164724
|
[29]
|
Seong, J., Kang, S.W., Patnaik, B.B., et al. (2016) Transcriptome Analysis of the Tadpole Shrimp (Triops longicaudatus) by Illumina Paired-End Sequencing: Assembly, Annotation, and Marker Discovery. Genes (Basel), 7, 114.
https://doi.org/10.3390/genes7120114
|
[30]
|
Lu, X., Kong, J., Luan, S., et al. (2016) Transcriptome Analysis of the Hepatopan-creas in the Pacific White Shrimp (Litopenaeus vannamei) under Acute Ammonia Stress. PLoS ONE, 11, e0164396.
https://doi.org/10.1371/journal.pone.0164396
|
[31]
|
Dai, P., Luan, S., Lu, X., et al. (2017) Comparative Transcriptome Analysis of the Pacific White Shrimp (Litopenaeus vannamei) Muscle Reveals the Molecular Basis of Residual Feed Intake. Scientific Reports, 7, Article No. 10483.
https://doi.org/10.1038/s41598-017-10475-y
|
[32]
|
Qi, C., Wang, L., Liu, M., et al. (2017) Transcriptomic and Morphological Analyses of Litopenaeus vannamei Intestinal Barrier in Response to Vibrio paraheamolyticus Infection Reveals Immune Response Signatures and Structural Disruption. Fish and Shellfish Immunology, 70, 437-450. https://doi.org/10.1016/j.fsi.2017.09.004
|
[33]
|
Huang, W., Ren, C., Li, H., et al. (2017) Transcriptomic Analyses on Muscle Tissues of Litopenaeus vannamei Provide the First Profile Insight into the Response to Low Temperature Stress. PLoS ONE, 12, e0178604.
https://doi.org/10.1371/journal.pone.0178604
|
[34]
|
Lee, J.H., Suryaningtyas, I.T., Yoon, T.H., et al. (2017) Transcriptomic Analysis of the Hepatopancreas Induced by Eyestalk Ablation in Shrimp, Litopenaeus vannamei. Comparative Biochemistry and Physiology—Part D: Genomics and Proteomics, 24, 99-110. https://doi.org/10.1016/j.cbd.2017.08.004
|
[35]
|
Ge, Q., Li, J., Wang, J., et al. (2017) Transcriptome Analysis of the Hepatopancreas in Exopalaemon carinicauda Infected with an AHPND-Causing Strain of Vibrio parahaemolyticus. Fish and Shellfish Immunology, 67, 620-633.
https://doi.org/10.1016/j.fsi.2017.06.047
|
[36]
|
Zhong, S., Mao, Y., Wang, J., et al. (2017) Transcriptome Analysis of Kuruma Shrimp (Marsupenaeus japonicus) Hepatopancreas in Response to White Spot Syndrome Virus (WSSV) under Experimental Infection. Fish and Shellfish Immunology, 70, 710-719. https://doi.org/10.1016/j.fsi.2017.09.054
|
[37]
|
Shi, X., Meng, X., Kong, J., et al. (2018) Transcriptome Analysis of “Huanghai No. 2” Fenneropenaeus chinensis Response to WSSV Using RNA-Seq. Fish and Shellfish Immunology, 75, 132-138.
https://doi.org/10.1016/j.fsi.2018.01.045
|
[38]
|
Zheng, Z., Wang, F., Aweya, J.J., et al. (2018) Comparative Transcriptomic Analysis of Shrimp Hemocytes in Response to Acute Hepatopancreas Necrosis Disease (AHPND) Causing Vibrio parahemolyticus Infection. Fish and Shellfish Immunology, 74, 10-18. https://doi.org/10.1016/j.fsi.2017.12.032
|
[39]
|
Lo, T.S., Cui, Z., Mong, J.L.Y., et al. (2007) Molecular Coordinated Regulation of Gene Expression during Ovarian Development in the Penaeid Shrimp. Marine Biotechnology, 9, 459-468. https://doi.org/10.1007/s10126-007-9006-4
|
[40]
|
Ventura-López, C., Galindo-Torres, P.E., Arcos, F.G., et al. (2017) Transcriptomic Information from Pacific White Shrimp (Litopenaeus vannamei) Ovary and Eyestalk, and Expression Patterns for Genes Putatively Involved in the Reproductive Process. General and Comparative Endocrinology, 246, 164-182.
https://doi.org/10.1016/j.ygcen.2016.12.005
|
[41]
|
Uengwetwanit, T., Ponza, P., Sangsrakru, D., et al. (2017) Transcrip-tome-Based Discovery of Pathways and Genes Related to Reproduction of the Black Tiger Shrimp (Penaeus monodon). Marine Ge-nomics, 37, 69-73.
|
[42]
|
Gao, Y., Wei, J., Yuan, J., et al. (2017) Transcriptome Analysis on the Exoskeleton Formation in Early De-velopmetal Stages and Reconstruction Scenario in Growth-Moulting in Litopenaeus vannamei. Scientific Reports, 7, Article No. 1098. https://doi.org/10.1038/s41598-017-01220-6
|
[43]
|
Xue, S., Liu, Y., Zhang, Y., et al. (2013) Sequencing and De Novo Analysis of the Hemocytes Transcriptome in Litopenaeus vannamei Response to White Spot Syndrome Virus Infection. PLoS ONE, 8, e76718.
https://doi.org/10.1371/journal.pone.0076718
|
[44]
|
Li, S., Zhang, X., Sun, Z., et al. (2013) Transcriptome Analysis on Chinese Shrimp Fenneropenaeus chinensis during WSSV Acute Infection. PLoS ONE, 8, e58627. https://doi.org/10.1371/journal.pone.0058627
|
[45]
|
Sookruksawong, S., Sun, F., Liu, Z., et al. (2013) RNA-Seq Analysis Re-veals Genes Associated with Resistance to Taura Syndrome Virus (TSV) in the Pacific White Shrimp Litopenaeus vannamei. Deve-lopmental & Comparative Immunology, 41, 523-533. https://doi.org/10.1016/j.dci.2013.07.020
|
[46]
|
曾地刚, 陈秀荔, 谢达祥, 等. 利用高通量测序技术分析IHHNV感染凡纳滨对虾的基因差异表达[J]. 南方农业学报, 2013(44): 1899-1903.
|
[47]
|
Soonthornchai, W., Chaiyapechara, S., Klinbunga, S., et al. (2016) Differentially Expressed Transcripts in Stomach of Penaeus monodon in Response to AHPND Infection. Developmental & Comparative Immunology, 65, 53-63.
https://doi.org/10.1016/j.dci.2016.06.013
|
[48]
|
Zhao, W., Wang, L., Liu, M., et al. (2017) Transcriptome, Antioxidant Enzyme Activity and Histopathology Analysis of Hepatopancreas from the White Shrimp Litopenaeus vannamei Fed with Aflatoxin B1(AFB1). Developmental & Comparative Immunology, 74, 69-81. https://doi.org/10.1016/j.dci.2017.03.031
|
[49]
|
Wang, W., Yang, S., Wang, C., et al. (2017) Gill Transcriptomes Reveal Involvement of Cytoskeleton Remodeling and Immune Defense in Ammonia Stress Response in the Banana Shrimp Fenneropenaeus merguiensis. Fish and Shellfish Immunology, 71, 319-328. https://doi.org/10.1016/j.fsi.2017.10.028
|
[50]
|
Chávez-Calvillo, G., Perez-Rueda, E., Lizama, G., et al. (2010) Differential Gene Expression in Litopenaeus vannamei Shrimp in Response to Diet Changes. Aquaculture, 300, 137-141. https://doi.org/10.1016/j.aquaculture.2009.11.027
|
[51]
|
Wei, J., Zhang, X., Yu, Y., et al. (2014) RNA-Seq Reveals the Dynamic and Diverse Features of Digestive Enzymes during Early Development of Pacific White Shrimp Litopenaeus vannamei. Comparative Biochemistry and Physiology—Part D: Genomics and Proteomics, 11, 37-44. https://doi.org/10.1016/j.cbd.2014.07.001
|
[52]
|
Van Eerden, E., Van Den Brand, H., Parmentier, H. K., et al. (2004) Phenotypic Selection for Residual Feed Intake and Its Effect on Humoral Immune Responses in Growing Layer Hens. Poultry Science, 83, 1602-1609.
https://doi.org/10.1093/ps/83.9.1602
|
[53]
|
Baranski, M., Gopikrishna, G., Robinson, N.A., et al. (2014) The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs. PLoS ONE, 9, e85413.
https://doi.org/10.1371/journal.pone.0085413
|
[54]
|
Yu, Y., Wei, J., Zhang, X., et al. (2014) SNP Discovery in the Transcriptome of White Pacific Shrimp Litopenaeus vannamei by Next Generation Sequencing. PLoS ONE, 9, e87218. https://doi.org/10.1371/journal.pone.0087218
|
[55]
|
杨铭, 于洋, 张晓军, 等. 基于转录组数据的凡纳滨对虾微卫星标记开发[J]. 海洋科学, 2017(41): 96-102.
|