[1]
|
Rees, J.H. (2011) Diagnosis and Treatment in Neuro-Oncology: An Oncological Perspective. The British Journal of Ra-diology, 84, 82-89. https://doi.org/10.1259/bjr/18061999
|
[2]
|
中华医学会病理学分会脑神经病理学组. 2016 WHO中枢神经系统肿瘤分类第4版修订版概述及胶质瘤部分介绍[J]. 中华病理学杂志, 2016, 45(11): 745-747.
|
[3]
|
Muir, C.S., Storm, H.H. and Polednak, A. (1994) Brain and Other Nervous System Tumours. Cancer Survival, 19-20, 369-392.
|
[4]
|
中国中枢神经系统胶质瘤诊断与治疗指南编写组. 中华医学杂志[J]. 中华医学会, 2016, 96(7): 485-509.
|
[5]
|
Strom, Q.T., Gittleman, H., Liao, P., et al. (2016) CBTRUS Statistical Report: Primary Brain and Other Central Nervous System Tumors Diagnosed in the United States in 2009-2013. Neuro-Oncology, 18, v1-v75.
https://doi.org/10.1093/neuonc/now207
|
[6]
|
Ng, H.K. and Lam, P.Y. (1998) The Molecular Genetics of Central Nervous System Tumors. Pathology, 30, 196-202.
https://doi.org/10.1080/00313029800169236
|
[7]
|
Schlessinger, J. (2000) Cell Signaling by Receptor Tyrosine Ki-nases. Cell, 103, 211-225.
https://doi.org/10.1016/S0092-8674(00)00114-8
|
[8]
|
王曦, 陈定. LncRNAs作为miRNA的靶模拟物调节miRNA [J]. 科技创新导报, 2016, 13(28): 176-177.
|
[9]
|
Marziali, A. and Akeson, M. (2001) New DNA Sequencing Methods. Annual Review of Biomedical Engineering, 3, 195-223. https://doi.org/10.1146/annurev.bioeng.3.1.195
|
[10]
|
Goodwin, S., McPherson, J.D. and McCombie, W.R. (2016) Coming of Age: Ten Years of Next-Generation Sequencing Technologies. Nature Reviews Genetics, 17, 333-351. https://doi.org/10.1038/nrg.2016.49
|
[11]
|
Niedzicka, M., Fijarczyk, A., Dudek, K., et al. (2016) Molecular Inver-sion Probes for Targeted Resequencing in Non-Model Organisms. Scientific Reports, 6, Article No. 24051. https://doi.org/10.1038/srep24051
|
[12]
|
Xu, J., Gao, C., Zhang, F., et al. (2016) Differentially Expressed lncRNAs and mRNAs Identified by Microarray Analysis in GBS Patients vs Healthy Controls. Scientific Reports, 6, Article No. 21819.
https://doi.org/10.1038/srep21819
|
[13]
|
Xu, J., Zhang, F., Gao, C., et al. (2017) Microarray Analysis of lncRNA and mRNA Expression Profiles in Patients with Neuromyelitis Optica. Molecular Neurobiology, 54, 2201-2208. https://doi.org/10.1007/s12035-016-9754-0
|
[14]
|
Wang, Z., Gerstein, M. and Snyder, M. (2009) RNA-Seq: A Revolutionary Tool for Transcriptomics. Nature Reviews Genetics, 10, 57-63. https://doi.org/10.1038/nrg2484
|
[15]
|
Yang, Y., et al. (2018) Analyzing the Interactions of mRNAs, miRNAs, lncRNAs and circRNAs to Predict Competing Endogenous RNA Networks in Glioblastoma. Journal of Neu-ro-Oncology, 137, 493-502.
https://doi.org/10.1007/s11060-018-2757-0
|
[16]
|
《中国中枢神经系统胶质瘤诊断与治疗指南》编写组. 中华医学杂志[J]. 中华医学会, 2016, 96(7): 485-509.
|
[17]
|
Kim, D., Pertea, G., Trapnell, C., et al. (2013) TopHat2: Accurate Alignment of Transcriptomes in the Presence of Insertions, Deletions and Gene Fusions. Genome Biology, 14, R36. https://doi.org/10.1186/gb-2013-14-4-r36
|
[18]
|
Trapnell, C., Williams, B.A., Pertea, G., et al. (2010) Transcript Assembly and Quantification by RNA-Seq Reveals Unannotated Transcripts and Isoform Switching during Cell Differ-entiation. Nature Biotechnology, 28, 511-515.
https://doi.org/10.1038/nbt.1621
|
[19]
|
Liang, S., Luo, H., Bu, D., et al. (2013) Utilizing Sequence Intrinsic Compo-sition to Classify Protein-Coding and Long Noncoding Transcripts. Nucleic Acids Research, 41, e166. https://doi.org/10.1093/nar/gkt646
|
[20]
|
Kong, L., Zhang, Y., Ye, Z.Q., et al. (2007) CPC: Assess the Pro-tein-Coding Potential of Transcripts Using Sequence Features and Support Vector Machine. Nucleic Acids Research, 35, W345-W349. https://doi.org/10.1093/nar/gkm391
|
[21]
|
Punta, M., Coggill, P.C., Eberhardt, R.Y., et al. (2011) The Pfam Protein Families Database. Nucleic Acids Research, 40, D290-D301. https://doi.org/10.1093/nar/gkr1065
|
[22]
|
Lin, M.F., Jungreis, I. and Kellis, M. (2011) PhyloCSF: A Comparative Genomics Method to Distinguish Protein Coding and Non-Coding Regions. Bioinformatics, 27, i275-i282. https://doi.org/10.1093/bioinformatics/btr209
|
[23]
|
Young, M.D., Wakefield, M.J., Smyth, G.K., et al. (2010) Gene Ontology Analysis for RNA-seq: Accounting for Selection Bias. Genome Biology, 11, R14. https://doi.org/10.1186/gb-2010-11-2-r14
|
[24]
|
Mao, X., Cai, T., Olyarchuk, J.G., et al. (2005) Automated Genome Annotation and Pathway Identification Using the KEGG Orthology (KO) as a Controlled Vocabulary. Bioinformatics, 21, 3787-3793.
https://doi.org/10.1093/bioinformatics/bti430
|
[25]
|
Kanehisa, M., Araki, M., Goto, S., et al. (2008) KEGG for Linking Genomes to Life and the Environment. Nucleic Acids Research, 36, D480-D484. https://doi.org/10.1093/nar/gkm882
|
[26]
|
Yao, L., Ye, P.C., Tan, W., et al. (2020) Decreased Expression of the Long Non-Coding RNA HOXD-AS2 Promotes Gastric Cancer Progression by Targeting HOXD8 and Activating PI3K/Akt Signaling Pathway. World Journal of Gastrointestinal Oncology, 12, 1237-1254. https://doi.org/10.4251/wjgo.v12.i11.1237
|
[27]
|
Zhang, W., Fei, J., Yu, S., et al. (2018) LINC01088 Inhibits Tu-morigenesis of Ovarian Epithelial Cells by Targeting miR-24-1-5p. Scientific Reports, 8, Article No. 2876. https://doi.org/10.1038/s41598-018-21164-9
|
[28]
|
Xue, C., Zhao, Y., Jiang, J. and Li, L. (2020) Expression Levels of lncRNAs Are Prognostic for Hepatocellular Carcinoma Overall Survival. American Journal of Translational Research, 12, 1873-1883.
|
[29]
|
O’Brien, H.E., Hannon, E., Hill, M.J., et al. (2018) Expression Quantitative Trait Loci in the De-veloping Human Brain and Their Enrichment in Neuropsychiatric Disorders. Genome Biology, 19, 194.
https://doi.org/10.1186/s13059-018-1567-1
|
[30]
|
Deist, M.S., Gallardo, R.A., Bunn, D.A., Dekkers, J.C.M., Zhou, H. and Lamont, S.J. (2017) Resistant and Susceptible Chicken Lines Show Distinctive Responses to Newcastle Disease Virus Infection in the Lung Transcriptome. BMC Genomics, 18, 989. https://doi.org/10.1186/s12864-017-4380-4
|
[31]
|
Rathe, S.K., Popescu, F.E., Johnson, J.E., et al. (2019) Identifica-tion of Candidate Neoantigens Produced by Fusion Transcripts in Human Osteosarcomas. Scientific Reports, 9, Article No. 358.
https://doi.org/10.1038/s41598-018-36840-z
|
[32]
|
Pande, M., Joon, A., Brewster, A.M., et al. (2018) Genetic Sus-ceptibility Markers for a Breast-Colorectal Cancer Phenotype: Exploratory Results from Genome-Wide Association Studies. PLoS ONE, 13, e0196245.
https://doi.org/10.1371/journal.pone.0196245
|
[33]
|
Liu, J.Q., Feng, Y.H., Zeng, S. and Zhong, M.Z. (2020) linc01088 Promotes Cell Proliferation by Scaffolding EZH2 and Repressing p21 in Human Non-Small Cell Lung Cancer. Life Sciences, 241, Article ID: 117134.
https://doi.org/10.1016/j.lfs.2019.117134
|
[34]
|
Ai, H., Xie, W., Xiu, A.H., et al. (2018) The Down-Regulation of Long Non-Coding RNA LINC01088 Is Associated with the Poor Prognosis of Epithelial Ovarian Cancer Patients. Eu-ropean Review for Medical and Pharmacological Sciences, 22, 5836-5841.
|
[35]
|
Liu, J., Yao, Y., Hu, Z., Zhou, H. and Zhong, M. (2019) Transcriptional Profiling of Long-Intergenic Noncoding RNAs in Lung Squamous Cell Carcinoma and Its Value in Diagnosis and Prognosis. Molecular Genetics & Genomic Medicine, 7, e994. https://doi.org/10.1002/mgg3.994
|
[36]
|
Kasiviswanathan, D., Chinnasamy Perumal, R., Bhuvaneswari, S., et al. (2020) Interactome of miRNAs and Transcriptome of Human Umbilical Cord Endothelial Cells Exposed to Short-Term Simulated Microgravity. NPJ Microgravity, 6, 18. https://doi.org/10.1038/s41526-020-00108-6
|
[37]
|
Liao, B., Zhou, M.X., Zhou, F.K., et al. (2020) Exosome-Derived MiRNAs as Biomarkers of the Development and Progression of In-tracranial Aneurysms. Journal of Atherosclerosis and Thrombosis, 27, 545-610.
https://doi.org/10.5551/jat.51102
|
[38]
|
Zhao, H., et al. (2020) Construction of ceRNA Coexpression Network and Screening of Molecular Targets in Colorectal Cancer. Disease Markers, 2020, Article ID: 2860582. https://doi.org/10.1155/2020/2860582
|
[39]
|
Motti, M.L., Minopoli, M., Di Carluccio, G., Ascierto, P.A. and Carri-ero, M.V. (2020) MicroRNAs as Key Players in Melanoma Cell Resistance to MAPK and Immune Checkpoint Inhibi-tors. International Journal of Molecular Sciences, 21, 4544. https://doi.org/10.3390/ijms21124544
|
[40]
|
Henriksen, M., Johnsen, K.B., Andersen, H.H., Pilgaard, L. and Duroux, M. (2014) MicroRNA Expression Signatures Determine Prognosis and Survival in Glioblastoma Multiforme—A Systematic Overview. Molecular Neurobiology, 50, 896-913. https://doi.org/10.1007/s12035-014-8668-y
|
[41]
|
He, H., Wang, L., Zhou, W., et al. (2015) MicroRNA Expression Profiling in Clear Cell Renal Cell Carcinoma: Identification and Functional Validation of Key miRNAs. PLoS ONE, 10, e0125672.
https://doi.org/10.1371/journal.pone.0125672
|
[42]
|
Liu, H., Sun, Y., Tian, H., et al. (2019) Characterization of Long Non-Coding RNA and Messenger RNA Profiles in Laryngeal Cancer by Weighted Gene Co-Expression Network Anal-ysis. Aging (Albany NY), 11, 10074-10099.
https://doi.org/10.18632/aging.102419
|
[43]
|
Roman-Canal, B., Tarragona, J., Moiola, C.P., et al. (2019) EV-Associated miRNAs from Peritoneal Lavage as Potential Diagnostic Biomarkers in Colorectal Cancer. Journal of Translational Medicine, 17, 208.
https://doi.org/10.1186/s12967-019-1954-8
|
[44]
|
Gilbertson, R.J. and Clifford, S.C. (2003) PDGFRB Is Overex-pressed in Metastatic Medulloblastoma. Nature Genetics, 35, 197-198. https://doi.org/10.1038/ng1103-197
|
[45]
|
Young, L.C. and Rodriguez-Viciana, P. (2018) MRAS: A Close but Un-derstudied Member of the RAS Family. Cold Spring Harbor Perspectives in Medicine, 8, a033621. https://doi.org/10.1101/cshperspect.a033621
|
[46]
|
Omazic, B., Ayoglu, B., Löhr, M., et al. (2017) A Preliminary Report: Radical Surgery and Stem Cell Transplantation for the Treatment of Patients with Pancreatic Cancer. Journal of Immunotherapy, 40, 132-139.
https://doi.org/10.1097/CJI.0000000000000164
|
[47]
|
Zhu, J., Zhao, Y.P. and Zhang, Y.Q. (2020) Low Expression of FOSL1 Is Associated with Favorable Prognosis and Sensitivity to Radiation/Pharmaceutical Therapy in Lower Grade Glioma. Neurological Research, 42, 522-527.
https://doi.org/10.1080/01616412.2020.1748323
|
[48]
|
Zhang, M., Liang, L., He, J., et al. (2020) Fra-1 Inhibits Cell Growth and the Warburg Effect in Cervical Cancer Cells via STAT1 Regulation of the p53 Signaling Pathway. Frontiers in Cell and Developmental Biology, 8, Article ID: 579629. https://doi.org/10.3389/fcell.2020.579629
|
[49]
|
Oguri, T., Katoh, O., Takahashi, T., et al. (1998) The Krüppel-Type Zinc Finger Family Gene, HKR1, Is Induced in Lung Cancer by Exposure to Platinum Drugs. Gene, 222, 61-67. https://doi.org/10.1016/S0378-1119(98)00464-8
|
[50]
|
Chua-On, D., Proungvitaya, T., Tummanatsakun, D., et al. (2020) Apoptosis-Inducing Factor, Mitochondrion-Associated 3 (AIFM3) Protein Level in the Sera as a Prognostic Marker of Cholangiocarcinoma Patients. Biomolecules, 10, 1021.
https://doi.org/10.3390/biom10071021
|
[51]
|
Li, J., Zhang, C., Yuan, X., Ren, Z. and Yu, Z. (2020) Correlations between Stemness Indices for Hepatocellular Carcinoma, Clinical Characteristics, and Prognosis. American Journal of Translational Research, 12, 5496-5510.
|
[52]
|
Wang, K., Chai, L., Qiu, Z., Zhang, Y., Gao, H. and Zhang, X. (2019) Overexpression of TRIM26 Suppresses the Proliferation, Metastasis, and Glycolysis in Papillary Thyroid Carcinoma Cells. Journal of Cellular Physiology, 234, 19019-19027. https://doi.org/10.1002/jcp.28541
|
[53]
|
Takaji, M., Ko-matsu, Y., Watakabe, A., Hashikawa, T. and Yamamori, T. (2009) Paraneoplastic Antigen-Like 5 Gene (PNMA5) Is Preferentially Expressed in the Association Areas in a Primate Specific Manner. Cerebral Cortex, 19, 2865-2879. https://doi.org/10.1093/cercor/bhp062
|
[54]
|
Wang, T., Xuan, Z., Dou, Y., et al. (2019) Identification of Novel Mu-tations in Preaxial Polydactyly Patients through Whole-Exome Sequencing. Molecular Genetics & Genomic Medicine, 7, e690. https://doi.org/10.1002/mgg3.690
|
[55]
|
Li, C., Yuan, B., Yu, X., et al. (2020) SLC19A1 May Serve as a Po-tential Biomarker for Diagnosis and Prognosis in Osteosarcoma. Clinical Laboratory, 66. https://doi.org/10.7754/Clin.Lab.2020.200246
|
[56]
|
Wallmann, T., Zhang, X.M., Wallerius, M., et al. (2018) Mi-croglia Induce PDGFRB Expression in Glioma Cells to Enhance Their Migratory Capacity. iScience, 9, 71-83. https://doi.org/10.1016/j.isci.2018.10.011
|
[57]
|
Miao, L., Yin, R.X., Zhang, Q.H., et al. (2019) A Novel circR-NA-miRNA-mRNA Network Identifies circ-YOD1 as a Biomarker for Coronary Artery Disease. Scientific Reports, 9, Article No. 18314.
https://doi.org/10.1038/s41598-019-54603-2
|