[1]
|
Semenza, G.L. and Wang, G.L. (1992) A Nuclear Factor Induced by Hypoxia via de Novo Protein Synthesis Binds to the Human Erythropoietin Gene Enhancer at a Site Required for Transcriptional Activation. Molecular and Cellular Bi-ology, 12, 5447-5454. https://doi.org/10.1128/mcb.12.12.5447-5454.1992
|
[2]
|
熊向英, 黄国强, 彭银辉, 刘旭佳. 低氧胁迫对鲻幼鱼生长、能量代谢和氧化应激的影响[J]. 水产学报, 2016, 40(1): 73-82.
|
[3]
|
Diaz, R.J. and Rosenberg, R. (1996) Marine Benthic Hypoxia: A Review of Its Ecological Effects and the Behavioural Responses of Benthic Macrofauna. Oceanographic Literature Review, 43, 1250.
|
[4]
|
Vaquer-Sunyer, R. and Duarte, C.M. (2008) Thresholds of Hypoxia for Marine Biodiversity. Proceedings of the National Academy of Sciences of the United States of America, 105, 15452-15457.
https://doi.org/10.1073/pnas.0803833105
|
[5]
|
Matey, V., Richards, J.G., Wang, Y., et al. (2008) The Effect of Hypoxia on Gill Morphology and Ionoregulatory Status in the Lake Qinghai Scaleless Carp, Gymnocypris przewalskii. The Journal of Experimental Biology, 211, 1063-1074.
https://doi.org/10.1242/jeb.010181
|
[6]
|
Li, H.L., Lin, H.R. and Xia, J.H. (2017) Differential Gene Expression Pro-files and Alternative Isoform Regulations in Gill of Nile Tilapia in Response to Acute Hypoxia. Marine Biotechnology (New York, NY), 19, 551-562.
https://doi.org/10.1007/s10126-017-9774-4
|
[7]
|
Gallage, S., Katagiri, T., Endo, M., et al. (2016) Influence of Moderate Hypoxia on Vaccine Efficacy against Vibrio anguillarum in Oreochromis niloticus (Nile tilapia). Fish Shellfish Immunol, 51, 271-281.
https://doi.org/10.1016/j.fsi.2016.02.024
|
[8]
|
Bickler, P.E. and Buck, L.T. (2007) Hypoxia Tolerance in Reptiles, Amphibians, and Fishes: Life with Variable Oxygen Availability. Annual Review of Physiology, 69, 145-170.
https://doi.org/10.1146/annurev.physiol.69.031905.162529
|
[9]
|
Li, M., Wang, X., Qi, C., et al. (2018) Metabolic Response of Nile tilapia (Oreochromis niloticus) to Acute and Chronic Hypoxia Stress. Aquaculture, 495, 187-195. https://doi.org/10.1016/j.aquaculture.2018.05.031
|
[10]
|
Gracey, A.Y., Lee, T.H., Higashi, R.M. and Fan, T. (2011) Hypoxia-Induced Mobilization of Stored Triglycerides in the Euryoxic Goby Gillichthys mirabilis. The Journal of Ex-perimental Biology, 214, 3005-3012.
https://doi.org/10.1242/jeb.059907
|
[11]
|
Vuori, K.A., Soitamo, A., Vuorinen, P.J. and Nikinmaa, M. (2004) Baltic Salmon (Salmo salar) Yolk-Sac Fry Mortality Is Associated with Disturbances in the Function of Hypoxia-Inducible Transcription Factor (HIF-1alpha) and Consecutive Gene Expression. Aquatic Toxicology (Amsterdam, Netherlands), 68, 301-313.
https://doi.org/10.1016/j.aquatox.2004.03.019
|
[12]
|
Lkhagvadorj, S., Qu, L., Cai, W., et al. (2010) Gene Expression Profiling of the Short-Term Adaptive Response to Acute Caloric Restriction in Liver and Adipose Tissues of Pigs Dif-fering in Feed Efficiency. American Journal of Physiology Regulatory, Integrative and Comparative Physiology, 298, R494-R507.
https://doi.org/10.1152/ajpregu.00632.2009
|
[13]
|
Bao, M., Shang, F., Liu, F., et al. (2021) Comparative Tran-scriptomic Analysis of the Brain in Takifugu rubripes Shows Its Tolerance to Acute Hypoxia. Fish Physiology and Bio-chemistry, 47, 1669-1685.
https://doi.org/10.1007/s10695-021-01008-6
|
[14]
|
Shang, F., Lu, Y., Li, Y., et al. (2022) Transcriptome Analysis Identifies Key Metabolic Changes in the Brain of Takifugu rubripes in Response to Chronic Hypoxia. Genes, 13, 1347. https://doi.org/10.3390/genes13081347
|
[15]
|
Shang, F., Bao, M., Liu, F., et al. (2022) Transcriptome Profiling of Tiger Pufferfish (Takifugu rubripes) Gills in Response to Acute Hypoxia. Aquaculture, 557, Article ID: 738324. https://doi.org/10.1016/j.aquaculture.2022.738324
|
[16]
|
Gao, K., Wang, Z., Zhou, X., et al. (2017) Comparative Transcriptome Analysis of Fast Twitch Muscle and Slow Twitch Muscle in Takifugu rubripes. Comparative Biochemis-try and Physiology Part D, Genomics & Proteomics, 24, 79-88. https://doi.org/10.1016/j.cbd.2017.08.002
|
[17]
|
Peng, H., Yang, B., Li, B., et al. (2019) Comparative Transcriptom-ic Analysis Reveals the Gene Expression Profiles in the Liver and Spleen of Japanese Pufferfish (Takifugu rubripes) in Response to Vibrio harveyi Infection. Fish & Shellfish Immunology, 90, 308-316. https://doi.org/10.1016/j.fsi.2019.04.304
|
[18]
|
Smith, F.M. and Croll, R.P. (2011) Autonomic Control of the Swim-bladder. Autonomic Neuroscience: Basic & Clinical, 165, 140-148. https://doi.org/10.1016/j.autneu.2010.08.002
|
[19]
|
Alexander, R.M. (1966) Physical Aspects of Swimbladder Func-tion. Biological Reviews of the Cambridge Philosophical Society, 41, 141-176. https://doi.org/10.1111/j.1469-185X.1966.tb01542.x
|
[20]
|
Ewels, P., Magnusson, M., Lundin, S. and Käller, M. (2016) MultiQC: Summarize Analysis Results for Multiple Tools and Samples in a Single Report. Bioinformatics, 32, 3047-3048. https://doi.org/10.1093/bioinformatics/btw354
|
[21]
|
Bolger, A.M., Lohse, M. and Usadel, B. (2014) Trimmomatic: A Flexible Trimmer for Illumina Sequence Data. Bioinformatics, 30, 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
|
[22]
|
Kim, D., Langmead, B. and Salzberg, S.L. (2015) HISAT: A Fast Spliced Aligner with Low Memory Requirements. Nature Methods, 12, 357-360. https://doi.org/10.1038/nmeth.3317
|
[23]
|
Anders, S., Pyl, P.T. and Huber, W. (2015) HTSeq—A Python Frame-work to Work with High-Throughput Sequencing Data. Bioinformatics, 31, 166-169. https://doi.org/10.1093/bioinformatics/btu638
|
[24]
|
Love, M.I., Huber, W. and Anders, S. (2014) Moderated Esti-mation of Fold Change and Dispersion for RNA-seq Data with DESeq2. Genome Biology, 15, 550. https://doi.org/10.1186/s13059-014-0550-8
|
[25]
|
Yu, G., Wang, L.-G., Han, Y. and He, Q.-Y. (2012) clusterPro-filer: An R Package for Comparing Biological Themes among Gene Clusters. Omics: A Journal of Integrative Biology, 16, 284-287. https://doi.org/10.1089/omi.2011.0118
|
[26]
|
Schmittgen, T.D. and Livak, K.J. (2008) Analyzing Re-al-Time PCR Data by the Comparative C(T) Method. Nature Protocols, 3, 1101-1108. https://doi.org/10.1038/nprot.2008.73
|
[27]
|
Kanehisa, M., Furumichi, M., Tanabe, M., et al. (2017) KEGG: New Perspectives on Genomes, Pathways, Diseases and Drugs. Nucleic Acids Research, 45, D353-D361. https://doi.org/10.1093/nar/gkw1092
|
[28]
|
Gracey, A.Y., Troll, J.V., Somero, G.N. (2001) Hypoxia-Induced Gene Expression Profiling in the Euryoxic Fish Gillichthys mirabilis. Proceedings of the National Academy of Sciences of the United States of America, 98, 1993-1998.
https://doi.org/10.1073/pnas.98.4.1993
|
[29]
|
van der Meer, D.L., van den Thillart, G.E., Witte, F., et al. (2005) Gene Expression Profiling of the Long-Term Adaptive Response to Hypoxia in the Gills of Adult Zebrafish. American Journal of Physiology Regulatory, Integrative and Comparative Physiology, 289, R1512-R1519. https://doi.org/10.1152/ajpregu.00089.2005
|
[30]
|
Saetan, W. and Tian, C. (2020) Comparative Transcriptome Anal-ysis of Gill Tissue in Response to Hypoxia in Silver Sillago (Sillago sihama). Animals (Basel), 10, 628. https://doi.org/10.3390/ani10040628
|
[31]
|
Jin, J., Wang, Y., Wu, Z., et al. (2017) Transcriptomic Analysis of Liver from Grass Carp (Ctenopharyngodon idellus) Exposed to High Environmental Ammonia Reveals the Activation of An-tioxidant and Apoptosis Pathways. Fish & Shellfish Immunology, 63, 444-451. https://doi.org/10.1016/j.fsi.2017.02.037
|
[32]
|
Mu, Y., Li, W., Wei, Z., et al. (2020) Transcriptome Analysis Re-veals Molecular Strategies in Gills and Heart of Large Yellow Croaker (Larimichthys crocea) under Hypoxia Stress. Fish & Shellfish Immunology, 104, 304-313.
https://doi.org/10.1016/j.fsi.2020.06.028
|
[33]
|
Liu, X. (2019) SLC Family Transporters. Advances in Experimental Medicine and Biology, 1141, 101-202.
https://doi.org/10.1007/978-981-13-7647-4_3
|
[34]
|
Jalali, R., Guo, J., Zandieh-Doulabi, B., et al. (2014) NBCe1 (SLC4A4) a Potential pH Regulator in Enamel Organ Cells during Enamel Development in the Mouse. Cell and Tissue Research, 358, 433-442.
https://doi.org/10.1007/s00441-014-1935-4
|
[35]
|
Segawa, H., Fukasawa, Y., Miyamoto, K., et al. (1999) Identifica-tion and Functional Characterization of a Na+-Independent Neutral Amino Acid Transporter with Broad Substrate Selec-tivity. The Journal of Biological Chemistry, 274, 19745-19751. https://doi.org/10.1074/jbc.274.28.19745
|
[36]
|
Kanai, Y., Segawa, H., Miyamoto, K., et al. (1998) Expression Cloning and Characterization of a Transporter for Large Neutral Amino Acids Activated by the Heavy Chain of 4F2 An-tigen (CD98). The Journal of Biological Chemistry, 273, 23629-23632. https://doi.org/10.1074/jbc.273.37.23629
|
[37]
|
Demidchik, V., Shabala, S., Isayenkov, S., et al. (2018) Calcium Transport across Plant Membranes: Mechanisms and Functions. The New Phytologist, 220, 49-69. https://doi.org/10.1111/nph.15266
|
[38]
|
Chin, E.R., Olson, E.N., Richardson, J.A., et al. (1998) A Calcineu-rin-Dependent Transcriptional Pathway Controls Skeletal Muscle Fiber Type. Genes & Development, 12, 2499-2509. https://doi.org/10.1101/gad.12.16.2499
|
[39]
|
Wilkins, B.J., De Windt, L.J., Bueno, O.F., et al. (2002) Targeted Disruption of NFATc3, but Not NFATc4, Reveals an Intrinsic Defect in Calcineurin-Mediated Cardiac Hypertrophic Growth. Molecular and Cellular Biology, 22, 7603-7613.
https://doi.org/10.1128/MCB.22.21.7603-7613.2002
|
[40]
|
Wilkins, B.J. and Molkentin, J.D. (2002) Calcineurin and Cardiac Hypertrophy: Where Have We Been? Where Are We Going? The Journal of Physiology, 541, 1-8. https://doi.org/10.1113/jphysiol.2002.017129
|
[41]
|
Garry, D.J., Kanatous, S.B. and Mammen, P.P. (2003) Emerg-ing Roles for Myoglobin in the Heart. Trends in Cardiovascular Medicine, 13, 111-116. https://doi.org/10.1016/S1050-1738(02)00256-6
|
[42]
|
Pinggera, A., Lieb, A., Benedetti, B., et al. (2015) CACNA1D de Novo Mutations in Autism Spectrum Disorders Activate Cav1.3 L-Type Calcium Channels. Biological Psychiatry, 77, 816-822.
https://doi.org/10.1016/j.biopsych.2014.11.020
|
[43]
|
Scholl, U., Goh, G., Stölting, G., et al. (2013) Somatic and Germline CACNA1D Calcium Channel Mutations in Aldosterone-Producing Adenomas and Primary Aldosteronism. Nature Genetics, 45, 1050-1054.
https://doi.org/10.1038/ng.2695
|
[44]
|
Cowan, K.J. and Storey, K.B. (2001) Protein Kinase and Phosphatase Re-sponses to Anoxia in Crayfish, Orconectes virilis: Purification and Characterization of cAMP-Dependent Protein Kinase. Comparative Biochemistry and Physiology Part B, Biochemistry & Molecular Biology, 130, 565-577. https://doi.org/10.1016/S1096-4959(01)00467-5
|
[45]
|
Simko, V., Iuliano, F., Sevcikova, A., et al. (2017) Hypoxia Induces Cancer-Associated cAMP/PKA Signalling through HIF-Mediated Transcriptional Control of Adenylyl Cyclases VI and VII. Scientific Reports, 7, Article No. 10121.
https://doi.org/10.1038/s41598-017-09549-8
|
[46]
|
Xu, Z.W., Wang, F.M., Gao, M.J., et al. (2010) Targeting the Na(+)/K(+)-ATPase alpha1 Subunit of Hepatoma HepG2 Cell Line to Induce Apoptosis and Cell Cycle Arresting. Bio-logical & Pharmaceutical Bulletin, 33, 743-751.
https://doi.org/10.1248/bpb.33.743
|
[47]
|
Jackson, C.R., Chaurasia, S.S., Hwang, C.K. and Iuvone, P.M. (2011) Dopamine D₄ Receptor Activation Controls Circadian Timing of the Adenylyl Cyclase 1/Cyclic AMP Signaling System in Mouse Retina. The European Journal of Neuroscience, 34, 57-64. https://doi.org/10.1111/j.1460-9568.2011.07734.x
|
[48]
|
Kitaguchi, T., Oya, M., Wada, Y., et al. (2013) Extracellu-lar Calcium Influx Activates Adenylate Cyclase 1 and Potentiates Insulin Secretion in MIN6 Cells. The Biochemical Journal, 450, 365-373. https://doi.org/10.1042/BJ20121022
|
[49]
|
Wang, Y., Hai, B., Niu, X., et al. (2017) Chronic Intermittent Hypoxia Disturbs Insulin Secretion and Causes Pancreatic Injury via the MAPK Signaling Pathway. Bio-chemistry and Cell Biology, 95, 415-420.
https://doi.org/10.1139/bcb-2016-0167
|
[50]
|
曾姣, 王倩, 王亚冰, 彭士明, 陈润, 马凌波, 等. 低氧及酸化胁迫对大黄鱼幼鱼离子调节与鳃组织结构的影响[J]. 应用生态学报, 2022, 33(2): 551-559. http://doi.org/10.13287/j.1001-9332.202202.032
|
[51]
|
Siddiqui, K., On, K.F. and Diffley, J.F. (2013) Regulating DNA Replication in Eukarya. Cold Spring Harbor Perspectives in Biology, 5, a012930. https://doi.org/10.1101/cshperspect.a012930
|
[52]
|
Tanaka, S. and Araki, H. (2013) Helicase Activation and Estab-lishment of Replication Forks at Chromosomal Origins of Replication. Cold Spring Harbor Perspectives in Biology, 5, a010371. https://doi.org/10.1101/cshperspect.a010371
|
[53]
|
Schafer, K.A. (1998) The Cell Cycle: A Review. Vet-erinary Pathology, 35, 461-478.
https://doi.org/10.1177/030098589803500601
|
[54]
|
Ortmann, B., Druker, J. and Rocha, S. (2014) Cell Cycle Pro-gression in Response to Oxygen Levels. Cellular and Molecular Life Sciences: CMLS, 71, 3569-3582. https://doi.org/10.1007/s00018-014-1645-9
|
[55]
|
Ortega, M.A., Nguyen, H. and Ward, W.S. (2016) ORC Proteins in the Mammalian Zygote. Cell and Tissue Research, 363, 195-200. https://doi.org/10.1007/s00441-015-2296-3
|
[56]
|
Huang, Z., Zang, K. and Reichardt, L.F. (2005) The Origin Recognition Core Complex Regulates Dendrite and Spine Development in Postmitotic Neurons. The Journal of Cell Bi-ology, 170, 527-535.
https://doi.org/10.1083/jcb.200505075
|
[57]
|
Da-Silva, L.F. and Duncker, B.P. (2007) ORC Function in Late G1: Maintaining the License for DNA Replication. Cell Cycle (Georgetown, Tex), 6, 128-130. https://doi.org/10.4161/cc.6.2.3743
|
[58]
|
Yu, Z., Feng, D. and Liang, C. (2004) Pairwise Interactions of the Six Human MCM Protein Subunits. Journal of Molecular Biology, 340, 1197-1206. https://doi.org/10.1016/j.jmb.2004.05.024
|