红花基因组学研究及应用
Research and Application of Genomics in Carthamus tinctorius
DOI: 10.12677/ojns.2025.135108, PDF,    科研立项经费支持
作者: 苏鲁方, 谭鑫雨, 胡涵冰, 陈 锐, 刘小云:江汉大学生命科学学院,汉江流域特色生物资源保护开发与利用工程技术研究中心,湖北 武汉
关键词: 红花测序技术基因组学表观基因组学Carthamus tinctorius Sequencing Technology Genomics Epigenomics
摘要: 红花作为一种重要的经济作物,在食品、医药和工业等领域具有广泛应用。随着测序技术的快速发展,红花基因组学研究取得了显著进展。本文阐述了基于全基因组和表观基因组测序技术在红花基因组研究中的应用,包括全基因组测序(GWAS)、表观基因组测序(epiGWAS)和转录组测序等。整合GWAS、表观组、转录组与代谢组多组学,已挖掘脂肪酸合成(FAD2, FAB2)、类黄酮/羟基红花色素A合成(CHS, DFR, CtCGT1)、花色(YABBY, CYP450)及抗旱(CtWRKYs, CtSAMS1)等关键基因。未来,单细胞表观图谱、泛基因组及AI育种模型将加速高油、高黄酮、抗逆红花新品种创制,为分子育种与产业升级提供基因蓝图。
Abstract: Safflower (Carthamus tinctorius), as an important economic crop, has extensive applications in food, medicine, and industry. With the rapid development of sequencing technology, significant progress has been made in safflower genomics research. This article reviews the application of whole genome and epigenome sequencing technologies in safflower genomics research, including whole genome sequencing (GWAS), epigenome sequencing (epiGWAS), and transcriptome sequencing. By integrating GWAS, epigenome, transcriptome, and metabolome multi-omics, key genes involved in fatty acid synthesis (FAD2, FAB2), flavonoid/hydroxy safflower pigment A synthesis (CHS, DFR, CtCGT1), flower color (YABBY, CYP450), and drought resistance (CtWRKYs, CtSAMS1) have been identified. In the future, single-cell epigenomic maps, pan-genomes, and AI breeding models will accelerate the creation of new safflower varieties with high oil content, high flavonoid content, and stress resistance, providing a genetic blueprint for molecular breeding and industrial upgrading.
文章引用:苏鲁方, 谭鑫雨, 胡涵冰, 陈锐, 刘小云. 红花基因组学研究及应用[J]. 自然科学, 2025, 13(5): 1028-1036. https://doi.org/10.12677/ojns.2025.135108

参考文献

[1] 赵钢, 王安虎. 红花的资源及药用价值[J]. 中国野生植物资源, 2004, 23(3): 24-25.
[2] 彭成. 中华道地药材中册[M]. 北京: 中国中医药出版社, 2011: 1757.
[3] 中国药典[S]. 北京: 中国医药科技出版社, 2015: 151.
[4] Sampathu, S.R., Shivashankar, S. and Lewis, Y.S. (1984) Saffron (Crocus sativus Linn.) Cultivation, Processing, Chemistry and Standardization. Critical Reviews in Food Science and Nutrition, 20, 123-157. [Google Scholar] [CrossRef
[5] Liakopoulou-Kyriakides, M. (1998) Dyeing of Cotton and Wool Fibres with Pigments from Crocus Sativus—Effect of Enzymatic Treatment. Dyes and Pigments, 36, 215-221. [Google Scholar] [CrossRef
[6] Collins, F.S., Morgan, M. and Patrinos, A. (2003) The Human Genome Project: Lessons from Large-Scale Biology. Science, 300, 286-290. [Google Scholar] [CrossRef] [PubMed]
[7] Satam, H., Joshi, K., Mangrolia, U., Waghoo, S., Zaidi, G., Rawool, S., et al. (2023) Next-Generation Sequencing Technology: Current Trends and Advancements. Biology, 12, Article 997. [Google Scholar] [CrossRef] [PubMed]
[8] Jain, M., Olsen, H.E., Paten, B. and Akeson, M. (2016) The Oxford Nanopore MinION: Delivery of Nanopore Sequencing to the Genomics Community. Genome Biology, 17, Article No. 239. [Google Scholar] [CrossRef] [PubMed]
[9] Iwasaki, M. and Paszkowski, J. (2014) Epigenetic Memory in Plants. The EMBO Journal, 33, 1987-1998. [Google Scholar] [CrossRef] [PubMed]
[10] Wu, Z., Liu, H., Zhan, W., Yu, Z., Qin, E., Liu, S., et al. (2021) The Chromosome-Scale Reference Genome of Safflower (Carthamus tinctorius) Provides Insights into Linoleic Acid and Flavonoid Biosynthesis. Plant Biotechnology Journal, 19, 1725-1742. [Google Scholar] [CrossRef] [PubMed]
[11] Chen, J., Guo, S., Hu, X., Wang, R., Jia, D., Li, Q., et al. (2023) Whole-Genome and Genome-Wide Association Studies Improve Key Agricultural Traits of Safflower for Industrial and Medicinal Use. Horticulture Research, 10, uhad197. [Google Scholar] [CrossRef] [PubMed]
[12] Zhu, H., Wang, Z., Ma, C., et al. (2003) Neuroprotective Effects of Hydroxysafflor Yellow A: In Vivo and in Vitro Studies. Planta Medica, 69, 429-433.
[13] Bai, X., Wang, W., Fu, R., Yue, S., Gao, H., Chen, Y., et al. (2020) Therapeutic Potential of Hydroxysafflor Yellow A on Cardio-Cerebrovascular Diseases. Frontiers in Pharmacology, 11, Article 1265. [Google Scholar] [CrossRef] [PubMed]
[14] 高天红. 红花提取物活血化瘀作用及抗血栓作用机制的实验研究[D]: [硕士学位论文]. 太原: 山西医科大学, 2011.
[15] Sreelakshmi, C.H. and Shivani, C.V.S.K.D. (2010) Genetic Divergence Studies in Safflower, Carthamus tinctorius L. Electronic Journal of Plant Breeding, 1, 1354-1357.
[16] 许兰杰, 刘新梅, 梁慧珍, 等. 红花种质顶果球籽粒质量及其相关农艺性状的回归分析和通径分析[J]. 中国农学通报, 2020, 36(22): 55-60.
[17] Pushpavalli, S., Rajeswari, R. and Sudhakar, C. (2015) Assessment of Genetic Diversity in Safflower Germplasm Lines (Carthamus tinctorius L.). Electronic Journal of Plant Breeding, 6, 546-549.
[18] Zhang, Y., Ling, D., Wang, L., Chen, H. and Yu, J. (2007) Genetic Diversity Analysis of Sesame Germplasm Using SRAP and SSR Markers. Acta Agronomica Sinica, 33, 1652-1658.
[19] 李兆龙, 乔燕春, 林锦英, 李光光. 节瓜抗枯萎病基因的分子标记研究[J]. 基因组学与应用生物学, 2015, 35(9): 1946-1949.
[20] Sardouei-Nasab, S., Nemati, Z., Mohammadi-Nejad, G., Haghi, R. and Blattner, F.R. (2023) Phylogenomic Investigation of Safflower (Carthamus tinctorius) and Related Species Using Genotyping-by-Sequencing (GBS). Scientific Reports, 13, Article No. 6212. [Google Scholar] [CrossRef] [PubMed]
[21] 董程, 杨景松, 刘子艳, 等. 红花非生物胁迫相关CtDHN1基因的克隆及功能研究[J]. 中国油料作物学报, 2020, 42(1): 85-90.
[22] Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T. and Henikoff, S. (2007) Genome-Wide Analysis of Arabidopsis Thaliana DNA Methylation Uncovers an Interdependence between Methylation and Transcription. Nature Genetics, 39, 61-69. [Google Scholar] [CrossRef] [PubMed]
[23] Cai, D., Li, Y., Martínez-Zapater, J.M., et al. (2021) Epigenetic Variation among Safflower Landraces Revealed by MS-AFLP. Frontiers in Plant Science, 12, Article 642631.
[24] Pearl, S., Li, Y., Wang, R., Dong, H., Chen, J., Pei, J., et al. (2023) DNA Methylation Polymorphisms Associated with Agronomic and Medicinal Traits in Safflower Recombinant Inbred Lines. Industrial Crops and Products, 197, Article 116615.
[25] Kidner, C.A. and Martienssen, R.A. (2005) The Developmental Role of MicroRNA in Plants. Current Opinion in Plant Biology, 8, 38-44. [Google Scholar] [CrossRef] [PubMed]
[26] Zhang, C., Li, Y., Wang, Y., et al. (2023) The Chromosome-Scale Reference Genome of Safflower (Carthamus tinctorius) Provides Insights into Linoleic Acid and Flavonoid Biosynthesis. Plant Biotechnology Journal, 21, 1270-1285.
[27] Tan, C., Zhang, Q., Shen, W., Liu, Y., Zhang, D., Chen, L., et al. (2024) Expression Profiles of MicroRNA-mRNA and Their Potential Impact on Anthocyanin Accumulation in Purple Petals of Brassica napus. BMC Plant Biology, 24, Article No. 1223. [Google Scholar] [CrossRef] [PubMed]
[28] Shi, Y., Liu, L., Wang, X., et al. (2024) MicroRNA Expression Patterns Unveil Differential Expression of Conserved miRNAs and Target Genes against Abiotic Stress in Safflower. Industrial Crops and Products, 195, Article 116615.
[29] Cavalieri, D., Rizzetto, L., Tocci, N., Rivero, D., Asquini, E., Si-Ammour, A., et al. (2016) Plant MicroRNAs as Novel Immunomodulatory Agents. Scientific Reports, 6, Article No. 25761. [Google Scholar] [CrossRef] [PubMed]
[30] Shafiq, S., Li, J. and Sun, Q. (2016) Functions of Plants Long Non-Coding RNAs. Biochimica et Biophysica ActaGene Regulatory Mechanisms, 1859, 155-162. [Google Scholar] [CrossRef] [PubMed]