基于密度泛函理论研究白花丹素分子的光谱与激发态性质
Study on the Spectral and Excited-State Properties of Plumbagin Based on Density Functional Theory
DOI: 10.12677/jocr.2026.141005, PDF,    科研立项经费支持
作者: 杨康涛, 陈翰冰, 王英达, 刘金华:牡丹江医科大学生命科学学院,黑龙江 牡丹江;王淇漫:牡丹江医科大学药学院,黑龙江 牡丹江;徐林轩*:牡丹江医科大学医学影像学院,黑龙江 牡丹江
关键词: 白花丹素密度泛函理论红外光谱紫外光谱激发态性质Plumbagin Density Functional Theory Infrared Spectroscopy Ultraviolet Spectroscopy Excited-State Properties
摘要: 白花丹素,即5-羟基-2-甲基-1,4-萘醌,具有抗菌、抗真菌、抗动脉粥样硬化和抗肿瘤等作用,是传统民间药材白花丹(拉丁学名:Plumbago zeylanica L.)中含量最丰富的核心生物活性成分。本文基于密度泛函理论,得到了白花丹素稳定的分子结构,理论计算得到的红外光谱与实验的红外峰数据具有较好的一致性。运用简正振动分析方法,获得各振动模式的势能分布,对摩尔吸收系数大于300 L·mol1·cm1的9个振动模式做出了归属指认。采用含时密度泛函理论,计算得到紫外-可见光吸收光谱图,在100~450 nm范围内存在5个明显吸收峰,并揭示出其源于7个主要电子跃迁。通过对跃迁相关的10个分子轨道进行可视化分析,结合分子轨道的波函数等值面图,阐明了这些激发态的电子结构特征。该工作可为阐释白花丹素的光谱学行为及其潜在药理作用机制提供理论依据。
Abstract: Plumbagin, 5-hydroxy-2-methyl-1,4-naphthoquinone, possesses antibacterial, antifungal, anti-atherosclerotic, and antitumor activities, and is the most abundant core bioactive component in the traditional folk medicinal herb Plumbago zeylanica L.. Based on density functional theory, this paper obtained the stable molecular structure of plumbagin, and the theoretically calculated infrared spectrum showed good consistency with the experimental infrared peak data. Using normal mode analysis, the potential energy distribution of each vibrational mode was obtained, and nine vibrational modes with molar absorptivity greater than 300 L·mol1·cm1 were assigned and identified. By employing time-dependent density functional theory, the ultraviolet-visible absorption spectrum was calculated, revealing five distinct absorption peaks in the range of 100~450 nm, which originated from seven main electronic transitions. Through visual analysis of the 10 molecular orbitals related to the transitions, combined with the isosurface of the molecular orbital wave functions, the electronic structural characteristics of these excited states were elucidated. This work provides a theoretical basis for elucidating the spectroscopic behavior and potential pharmacological mechanisms of plumbagin.
文章引用:杨康涛, 陈翰冰, 王英达, 刘金华, 王淇漫, 徐林轩. 基于密度泛函理论研究白花丹素分子的光谱与激发态性质[J]. 有机化学研究, 2026, 14(1): 54-64. https://doi.org/10.12677/jocr.2026.141005

参考文献

[1] Jetty, A., Subhakar, C., Rajagopal, D., Jetty, M., Subramanyam, M. and Marthanda Murthy, M. (2010) Antimicrobial Activities of Neo-and 1-Epineo-Isoshinanolones from Plumbago zeylanica Roots. Pharmaceutical Biology, 48, 1007-1011. [Google Scholar] [CrossRef] [PubMed]
[2] Lin, L., Yang, L. and Chou, C. (2003) Cytotoxic Naphthoquinones and Plumbagic Acid Glucosides from Plumbago zeylanica. Phytochemistry, 62, 619-622. [Google Scholar] [CrossRef] [PubMed]
[3] Tang, X.G., Wang, C., Ma, X.C., Zhang, H.L., Huo, X.K., Zhang, B.J. and Zhong, M. (2016) Chemical Constituents of the Aerial Parts from Plumbago zeylanica. Journal of Chinese Medicinal Materials, 39, 1541-1544.
[4] Nguyen, A.T., Malonne, H., Duez, P., Vanhaelen-Fastre, R., Vanhaelen, M. and Fontaine, J. (2004) Cytotoxic constituents from Plumbago zeylanica. Fitoterapia, 75, 500-504. [Google Scholar] [CrossRef] [PubMed]
[5] 王培红, 周健. 白花丹中酚类成分及其抗氧化活性研究[J]. 中草药, 2019, 50(22): 5419-5423.
[6] Kaewbumrung, S. and Panichayupakaranant, P. (2014) Antibacterial Activity of Plumbagin Derivative-Rich Plumbago indica Root Extracts and Chemical Stability. Natural Product Research, 28, 835-837. [Google Scholar] [CrossRef] [PubMed]
[7] Gwee, P.S., Khoo, K.S., Ong, H.C. and Sit, N.W. (2014) Bioactivity-Guided Isolation and Structural Characterization of the Antifungal Compound, Plumbagin, from nepenthes Gracilis. Pharmaceutical Biology, 52, 1526-1531. [Google Scholar] [CrossRef] [PubMed]
[8] Sharma, I., Gusain, D. and Dixit, V.P. (1991) Hypolipidaemic and Antiatherosclerotic Effects of Plumbagin in Rabbits. Indian Journal of Physiology and Pharmacology, 35, 10-14.
[9] Joo, M.K., Park, J., Kim, S.H., Yoo, H.S., Lee, B.J., Chun, H.J., et al. (2015) Antitumorigenic Effect of Plumbagin by Induction of SH2-Containing Protein Tyrosine Phosphatase 1 in Human Gastric Cancer Cells. International Journal of Oncology, 46, 2380-2388. [Google Scholar] [CrossRef] [PubMed]
[10] Sunil Kumar, M.R., Kiran Aithal, B., Udupa, N., Sreenivasulu Reddy, M., Raakesh, V., Murthy, R.S.R., et al. (2011) Formulation of Plumbagin Loaded Long Circulating Pegylated Liposomes:in Vivoevaluation in C57BL/6J Mice Bearing B16F1 Melanoma. Drug Delivery, 18, 511-522. [Google Scholar] [CrossRef] [PubMed]
[11] Qiao, H., Cui, Z., Yang, S., Ji, D., Wang, Y., Yang, Y., et al. (2017) Targeting Osteocytes to Attenuate Early Breast Cancer Bone Metastasis by Theranostic Upconversion Nanoparticles with Responsive Plumbagin Release. ACS Nano, 11, 7259-7273. [Google Scholar] [CrossRef] [PubMed]
[12] Thakor, N. and Janathia, B. (2022) Plumbagin: A Potential Candidate for Future Research and Development. Current Pharmaceutical Biotechnology, 23, 1800-1812. [Google Scholar] [CrossRef] [PubMed]
[13] Minow, R.A., Benjamin, R.S. and Gottlieb, J.A. (1975) Adriamycin (NSC 123127) Cardiomyopathy. An Overview with Determination of Risk Factors. Cancer Chemotherapy Reports, 6, 195-201.
[14] Singh, K., Naidoo, Y. and Baijnath, H. (2017) A Comprehensive Review on the Genus Plumbago with Focus on Plumbago Auriculata (Plumbaginaceae). African Journal of Traditional, Complementary and Alternative Medicines, 15, 199-215. [Google Scholar] [CrossRef
[15] 谭明雄, 陈振锋, 王恒山, 梁宏, 秦三海, 杨斌, 刘华钢. 白花丹素Cu(Ⅱ),Co(Ⅱ)金属配合物的合成、表征及抗肿瘤活性研究[C]//中国化学会. 第四届全国化学生物学学术会议暨国际化学与生物/医学交叉研讨会论文集. 武汉, 2005: 143.
https://kns.cnki.net/kcms2/article/abstract?v=iwDheDcO5w5QZAjATx1GojDDa0qcPneGx3biG2SJDdElBuDScjM3LG9imbE2Vh2RmxuYOPxWn_dg2v2Xe5DJj666ln41lBuYsZrycEeZJVFC2Jj-ickW-e9kWgghA_YUpYo7dytXDzdnexKzjOb1Jf0StI5vq_AL8sImtkeJcJzgSiioViM5Lw==&uniplatform=NZKPT&language=CHS
[16] 谭明雄. 中药白花丹活性成分白花丹素金属配合物的合成、抗肿瘤活性及与DNA作用研究[D]: [博士学位论文]. 长沙: 中南大学, 2008.
[17] 陈振锋, 彭艳, 谭明雄, 刘延成, 王恒山, 梁宏. 基于中药活性成分的金属基抗肿瘤药物前期研究[J]. 化学进展, 2009, 21(5): 929-933.
[18] 蔡放, 江仁望. 天然产物的金属铜配合物研究进展[J]. 亚太传统医药, 2011, 7(6): 163-168.
[19] 顾运琼, 梁伟江, 罗旭健, 周能, 谭明雄. 白花丹素镧(Ⅲ)配合物与牛血清白蛋白相互作用的光谱学研究[J]. 化学研究, 2013, 24(6): 605-610.
[20] Gou, Y., Zhang, Z., Qi, J., Liang, S., Zhou, Z., Yang, F., et al. (2015) Folate-Functionalized Human Serum Albumin Carrier for Anticancer Copper(II) Complexes Derived from Natural Plumbagin. Journal of Inorganic Biochemistry, 153, 13-22. [Google Scholar] [CrossRef] [PubMed]
[21] 申文英, 顾运琼, 谭明雄. 白花丹素钇(Ⅲ)配合物的合成、抗肿瘤活性及与牛血清白蛋白作用研究[J]. 玉林师范学院学报, 2017, 38(2): 42-47.
[22] Zhang, H., Lu, X., Wu, J., Ou, M., Chen, N., Liang, H., et al. (2024) Discovery of Mitochondrion-Targeting Copper(II)-Plumbagin and-Bipyridine Complexes as Chemodynamic Therapy Agents with Enhanced Antitumor Activity. Dalton Transactions, 53, 3244-3253. [Google Scholar] [CrossRef] [PubMed]
[23] Sharma, H., Kumar, K., Choudhary, C., Mishra, P.K. and Vaidya, B. (2014) Development and Characterization of Metal Oxide Nanoparticles for the Delivery of Anticancer Drug. Artificial Cells, Nanomedicine, and Biotechnology, 44, 672-679. [Google Scholar] [CrossRef] [PubMed]
[24] Zhao, Y. and Truhlar, D.G. (2008) The M06 Suite of Density Functionals for Main Group Thermochemistry, Thermochemical Kinetics, Noncovalent Interactions, Excited States, and Transition Elements: Two New Functionals and Systematic Testing of Four M06-Class Functionals and 12 Other Functionals. Theoretical Chemistry Accounts, 120, 215-241. [Google Scholar] [CrossRef
[25] Weigend, F. and Ahlrichs, R. (2005) Balanced Basis Sets of Split Valence, Triple Zeta Valence and Quadruple Zeta Valence Quality for H to Rn: Design and Assessment of Accuracy. Physical Chemistry Chemical Physics, 7, 3297-3305. [Google Scholar] [CrossRef] [PubMed]
[26] Andrae, D., Häußermann, U., Dolg, M., Stoll, H. and Preuß, H. (1990) Energy-Adjustedab Initio Pseudopotentials for the Second and Third Row Transition Elements. Theoretica chimica acta, 77, 123-141. [Google Scholar] [CrossRef
[27] Grimme, S., Antony, J., Ehrlich, S. and Krieg, H. (2010) A Consistent and Accurate AB initio Parametrization of Density Functional Dispersion Correction (DFT-D) for the 94 Elements H-Pu. The Journal of Chemical Physics, 132, Article No. 154104. [Google Scholar] [CrossRef] [PubMed]
[28] Perdew, J.P., Ernzerhof, M. and Burke, K. (1996) Rationale for Mixing Exact Exchange with Density Functional Approximations. The Journal of Chemical Physics, 105, 9982-9985. [Google Scholar] [CrossRef
[29] Lu, T. and Chen, F. (2011) Multiwfn: A Multifunctional Wavefunction Analyzer. Journal of Computational Chemistry, 33, 580-592. [Google Scholar] [CrossRef] [PubMed]
[30] Jamróz, M.H. (2004) Vbrational Energy Distribution Analysis VEDA 4 Program. Warsaw.
[31] Alecu, I.M., Zheng, J., Zhao, Y. and Truhlar, D.G. (2010) Computational Thermochemistry: Scale Factor Databases and Scale Factors for Vibrational Frequencies Obtained from Electronic Model Chemistries. Journal of Chemical Theory and Computation, 6, 2872-2887. [Google Scholar] [CrossRef] [PubMed]
[32] 中国科学院上海有机化学研究所. 化学专业数据库[DB/OL].
https://organchem.csdb.cn, 2025-12-24.
[33] Brown, T.L. (1958) Infrared Intensities and Molecular Structure. Chemical Reviews, 58, 581-608. [Google Scholar] [CrossRef