|
[1]
|
Lee, R.C., Feinbaum, R.L. and Ambros, V. (1993) The C. elegans Heterochronic Gene Lin-4 Encodes Small RNAs with Antisense Complementarity to Lin-14. Cell, 75, 843-854. [Google Scholar] [CrossRef] [PubMed]
|
|
[2]
|
Mello, C. (2007) Return to the RNAi World: Rethinking Gene Expression and Evolution. Cell Death & Differentiation, 14, 2013-2020. [Google Scholar] [CrossRef] [PubMed]
|
|
[3]
|
Pederson, T. (2024) Tributaries of the 2023 Nobel Prize in Physiology or Medicine, and Lessons Learned. RNA, 30, 101-104. [Google Scholar] [CrossRef] [PubMed]
|
|
[4]
|
Kim, Y. and Han, J. (2024) Nobel-Winning MicroRNA, the Micromaestro of Gene Silencing. Molecules and Cells, 47, Article ID: 100123. [Google Scholar] [CrossRef] [PubMed]
|
|
[5]
|
Kole, R., Krainer, A.R. and Altman, S. (2012) RNA Therapeutics: Beyond RNA Interference and Antisense Oligonucleotides. Nature Reviews Drug Discovery, 11, 125-140. [Google Scholar] [CrossRef] [PubMed]
|
|
[6]
|
Watts, J.K., Brown, R.H. and Khvorova, A. (2019) Nucleic Acid Therapeutics for Neurological Diseases. Neurotherapeutics, 16, 245-247. [Google Scholar] [CrossRef] [PubMed]
|
|
[7]
|
Ji, W., Li, Y., Peng, H., Zhao, R. and Zhang, X. (2022) Nature-Inspired Dynamic Gene-Loaded Nanoassemblies for the Treatment of Brain Diseases. Advanced Drug Delivery Reviews, 180, Article ID: 114029. [Google Scholar] [CrossRef] [PubMed]
|
|
[8]
|
Thakur, S., Sinhari, A., Jain, P. and Jadhav, H.R. (2022) A Perspective on Oligonucleotide Therapy: Approaches to Patient Customization. Frontiers in Pharmacology, 13, Article 1006304. [Google Scholar] [CrossRef] [PubMed]
|
|
[9]
|
Hammond, S.M., Aartsma‐Rus, A., Alves, S., Borgos, S.E., Buijsen, R.A.M., Collin, R.W.J., et al. (2021) Delivery of Oligonucleotide‐Based Therapeutics: Challenges and Opportunities. EMBO Molecular Medicine, 13, e13243. [Google Scholar] [CrossRef] [PubMed]
|
|
[10]
|
Malecova, B., Burke, R.S., Cochran, M., Hood, M.D., Johns, R., Kovach, P.R., et al. (2023) Targeted Tissue Delivery of RNA Therapeutics Using Antibody-Oligonucleotide Conjugates (AOCs). Nucleic Acids Research, 51, 5901-5910. [Google Scholar] [CrossRef] [PubMed]
|
|
[11]
|
Ming, X. (2011) Cellular Delivery of siRNA and Antisense Oligonucleotides via Receptor-Mediated Endocytosis. Expert Opinion on Drug Delivery, 8, 435-449. [Google Scholar] [CrossRef] [PubMed]
|
|
[12]
|
Roopenian, D.C. and Akilesh, S. (2007) FcRn: The Neonatal Fc Receptor Comes of Age. Nature Reviews Immunology, 7, 715-725. [Google Scholar] [CrossRef] [PubMed]
|
|
[13]
|
Li, M., An, H., Zhang, J., Li, W., Yu, C. and Wang, L. (2025) Advances in the Pharmaceutical Development of Antibody-Oligonucleotide Conjugates. European Journal of Pharmaceutical Sciences, 215, Article ID: 107292. [Google Scholar] [CrossRef]
|
|
[14]
|
Cochran, M., Arias, D., Burke, R., Chu, D., Erdogan, G., Hood, M., et al. (2024) Structure-Activity Relationship of Antibody-Oligonucleotide Conjugates: Evaluating Bioconjugation Strategies for Antibody-siRNA Conjugates for Drug Development. Journal of Medicinal Chemistry, 67, 14852-14867. [Google Scholar] [CrossRef] [PubMed]
|
|
[15]
|
Cuellar, T.L., Barnes, D., Nelson, C., Tanguay, J., Yu, S., Wen, X., et al. (2015) Systematic Evaluation of Antibody-Mediated siRNA Delivery Using an Industrial Platform of THIOMAB-siRNA Conjugates. Nucleic Acids Research, 43, 1189-1203. [Google Scholar] [CrossRef] [PubMed]
|
|
[16]
|
Sugo, T., Terada, M., Oikawa, T., Miyata, K., Nishimura, S., Kenjo, E., et al. (2016) Development of Antibody-siRNA Conjugate Targeted to Cardiac and Skeletal Muscles. Journal of Controlled Release, 237, 1-13. [Google Scholar] [CrossRef] [PubMed]
|
|
[17]
|
Thornton, C.A., Moxley, R.T., Eichinger, K., Heatwole, C., Mignon, L., Arnold, W.D., et al. (2023) Antisense Oligonucleotide Targeting DMPK in Patients with Myotonic Dystrophy Type 1: A Multicentre, Randomised, Dose-Escalation, Placebo-Controlled, Phase 1/2a Trial. The Lancet Neurology, 22, 218-228. [Google Scholar] [CrossRef] [PubMed]
|
|
[18]
|
Roberts, T.C., Langer, R. and Wood, M.J.A. (2020) Advances in Oligonucleotide Drug Delivery. Nature Reviews Drug Discovery, 19, 673-694. [Google Scholar] [CrossRef] [PubMed]
|
|
[19]
|
Beck, A., Goetsch, L., Dumontet, C. and Corvaïa, N. (2017) Strategies and Challenges for the Next Generation of Antibody-Drug Conjugates. Nature Reviews Drug Discovery, 16, 315-337. [Google Scholar] [CrossRef] [PubMed]
|
|
[20]
|
Hong, Y., Nam, S. and Moon, A. (2023) Antibody-Drug Conjugates and Bispecific Antibodies Targeting Cancers: Applications of Click Chemistry. Archives of Pharmacal Research, 46, 131-148. [Google Scholar] [CrossRef] [PubMed]
|
|
[21]
|
Labrijn, A.F., Janmaat, M.L., Reichert, J.M. and Parren, P.W.H.I. (2019) Bispecific Antibodies: A Mechanistic Review of the Pipeline. Nature Reviews Drug Discovery, 18, 585-608. [Google Scholar] [CrossRef] [PubMed]
|
|
[22]
|
Huggins, I.J., Medina, C.A., Springer, A.D., van den Berg, A., Jadhav, S., Cui, X., et al. (2019) Site Selective Antibody-Oligonucleotide Conjugation via Microbial Transglutaminase. Molecules, 24, Article 3287. [Google Scholar] [CrossRef] [PubMed]
|
|
[23]
|
Quemener, A.M., Bachelot, L., Forestier, A., Donnou‐Fournet, E., Gilot, D. and Galibert, M. (2020) The Powerful World of Antisense Oligonucleotides: From Bench to Bedside. WIREs RNA, 11, e1594. [Google Scholar] [CrossRef] [PubMed]
|
|
[24]
|
Dhuri, K., Bechtold, C., Quijano, E., Pham, H., Gupta, A., Vikram, A., et al. (2020) Antisense Oligonucleotides: An Emerging Area in Drug Discovery and Development. Journal of Clinical Medicine, 9, Article 2004. [Google Scholar] [CrossRef] [PubMed]
|
|
[25]
|
Deleavey, G.F. and Damha, M.J. (2012) Designing Chemically Modified Oligonucleotides for Targeted Gene Silencing. Chemistry & Biology, 19, 937-954. [Google Scholar] [CrossRef] [PubMed]
|
|
[26]
|
Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E. and Mello, C.C. (1998) Potent and Specific Genetic Interference by Double-Stranded RNA in Caenorhabditis Elegans. Nature, 391, 806-811. [Google Scholar] [CrossRef] [PubMed]
|
|
[27]
|
Yin, W. and Rogge, M. (2019) Targeting RNA: A Transformative Therapeutic Strategy. Clinical and Translational Science, 12, 98-112. [Google Scholar] [CrossRef] [PubMed]
|
|
[28]
|
Layzer, J.M., Mccaffrey, A.P., Tanner, A.K., Huang, Z., Kay, M.A. and Sullenger, B.A. (2004) In Vivo Activity of Nuclease-Resistant siRNAs. RNA, 10, 766-771. [Google Scholar] [CrossRef] [PubMed]
|
|
[29]
|
Gantier, M.P. and Williams, B.R.G. (2007) The Response of Mammalian Cells to Double-Stranded RNA. Cytokine & Growth Factor Reviews, 18, 363-371. [Google Scholar] [CrossRef] [PubMed]
|
|
[30]
|
Khvorova, A. and Watts, J.K. (2017) The Chemical Evolution of Oligonucleotide Therapies of Clinical Utility. Nature Biotechnology, 35, 238-248. [Google Scholar] [CrossRef] [PubMed]
|
|
[31]
|
Wang, L., Amphlett, G., Blättler, W.A., Lambert, J.M. and Zhang, W. (2005) Structural Characterization of the Maytansinoid-Monoclonal Antibody Immunoconjugate, huN901-DM1, by Mass Spectrometry. Protein Science, 14, 2436-2446. [Google Scholar] [CrossRef] [PubMed]
|
|
[32]
|
Hamblett, K.J., Senter, P.D., Chace, D.F., Sun, M.M.C., Lenox, J., Cerveny, C.G., et al. (2004) Effects of Drug Loading on the Antitumor Activity of a Monoclonal Antibody Drug Conjugate. Clinical Cancer Research, 10, 7063-7070. [Google Scholar] [CrossRef] [PubMed]
|
|
[33]
|
Axup, J.Y., Bajjuri, K.M., Ritland, M., Hutchins, B.M., Kim, C.H., Kazane, S.A., et al. (2012) Synthesis of Site-Specific Antibody-Drug Conjugates Using Unnatural Amino Acids. Proceedings of the National Academy of Sciences of the United States of America, 109, 16101-16106. [Google Scholar] [CrossRef] [PubMed]
|
|
[34]
|
Junutula, J.R., Raab, H., Clark, S., Bhakta, S., Leipold, D.D., Weir, S., et al. (2008) Site-Specific Conjugation of a Cytotoxic Drug to an Antibody Improves the Therapeutic Index. Nature Biotechnology, 26, 925-932. [Google Scholar] [CrossRef] [PubMed]
|
|
[35]
|
Strop, P., Liu, S., Dorywalska, M., Delaria, K., Dushin, R.G., Tran, T., et al. (2013) Location Matters: Site of Conjugation Modulates Stability and Pharmacokinetics of Antibody Drug Conjugates. Chemistry & Biology, 20, 161-167. [Google Scholar] [CrossRef] [PubMed]
|
|
[36]
|
Strop, P. (2014) Versatility of Microbial Transglutaminase. Bioconjugate Chemistry, 25, 855-862. [Google Scholar] [CrossRef] [PubMed]
|
|
[37]
|
Farias, S.E., Strop, P., Delaria, K., Galindo Casas, M., Dorywalska, M., Shelton, D.L., et al. (2014) Mass Spectrometric Characterization of Transglutaminase Based Site-Specific Antibody-Drug Conjugates. Bioconjugate Chemistry, 25, 240-250. [Google Scholar] [CrossRef] [PubMed]
|
|
[38]
|
Wijdeven, M.A., van Geel, R., Hoogenboom, J.H., Verkade, J.M.M., Janssen, B.M.G., Hurkmans, I., et al. (2022) Enzymatic Glycan Remodeling-Metal Free Click (GlycoConnect™) Provides Homogenous Antibody-Drug Conjugates with Improved Stability and Therapeutic Index without Sequence Engineering. mAbs, 14, Article ID: 2078466. [Google Scholar] [CrossRef] [PubMed]
|
|
[39]
|
Li, S., Cai, H., He, J., Chen, H., Lam, S., Cai, T., et al. (2016) Extent of the Oxidative Side Reactions to Peptides and Proteins during the CuAAC Reaction. Bioconjugate Chemistry, 27, 2315-2322. [Google Scholar] [CrossRef] [PubMed]
|
|
[40]
|
Wu, P., Prachyathipsakul, T., Huynh, U., Qiu, J., Jerry, D.J. and Thayumanavan, S. (2023) Optimizing Conjugation Chemistry, Antibody Conjugation Site, and Surface Density in Antibody-Nanogel Conjugates (ANCs) for Cell-Specific Drug Delivery. Bioconjugate Chemistry, 34, 707-718. [Google Scholar] [CrossRef] [PubMed]
|
|
[41]
|
Khongorzul, P., Ling, C.J., Khan, F.U., Ihsan, A.U. and Zhang, J. (2020) Antibody-Drug Conjugates: A Comprehensive Review. Molecular Cancer Research, 18, 3-19. [Google Scholar] [CrossRef] [PubMed]
|
|
[42]
|
Doherty, G.J. and McMahon, H.T. (2009) Mechanisms of Endocytosis. Annual Review of Biochemistry, 78, 857-902. [Google Scholar] [CrossRef] [PubMed]
|
|
[43]
|
Bien-Ly, N., Yu, Y.J., Bumbaca, D., Elstrott, J., Boswell, C.A., Zhang, Y., et al. (2014) Transferrin Receptor (TFR) Trafficking Determines Brain Uptake of TFR Antibody Affinity Variants. Journal of Experimental Medicine, 211, 233-244. [Google Scholar] [CrossRef] [PubMed]
|
|
[44]
|
Chatterjee, S., Kon, E., Sharma, P. and Peer, D. (2024) Endosomal Escape: A Bottleneck for LNP-Mediated Therapeutics. Proceedings of the National Academy of Sciences of the United States of America, 121, e2307800120. [Google Scholar] [CrossRef] [PubMed]
|
|
[45]
|
Wittrup, A., Ai, A., Liu, X., Hamar, P., Trifonova, R., Charisse, K., et al. (2015) Visualizing Lipid-Formulated siRNA Release from Endosomes and Target Gene Knockdown. Nature Biotechnology, 33, 870-876. [Google Scholar] [CrossRef] [PubMed]
|
|
[46]
|
Dowdy, S.F., Setten, R.L., Cui, X. and Jadhav, S.G. (2022) Delivery of RNA Therapeutics: The Great Endosomal Escape! Nucleic Acid Therapeutics, 32, 361-368. [Google Scholar] [CrossRef] [PubMed]
|
|
[47]
|
Sahay, G., Querbes, W., Alabi, C., Eltoukhy, A., Sarkar, S., Zurenko, C., et al. (2013) Efficiency of siRNA Delivery by Lipid Nanoparticles Is Limited by Endocytic Recycling. Nature Biotechnology, 31, 653-658. [Google Scholar] [CrossRef] [PubMed]
|
|
[48]
|
Erazo-Oliveras, A., Najjar, K., Dayani, L., Wang, T., Johnson, G.A. and Pellois, J. (2014) Protein Delivery into Live Cells by Incubation with an Endosomolytic Agent. Nature Methods, 11, 861-867. [Google Scholar] [CrossRef] [PubMed]
|
|
[49]
|
Dacal, M., Bradford, M.A., Plaza, C., Maestre, F.T. and García-Palacios, P. (2019) Soil Microbial Respiration Adapts to Ambient Temperature in Global Drylands. Nature Ecology & Evolution, 3, 232-238. [Google Scholar] [CrossRef] [PubMed]
|
|
[50]
|
Bosgra, S., Sipkens, J., de Kimpe, S., Den Besten, C., Datson, N. and van Deutekom, J. (2019) The Pharmacokinetics of 2’-o-Methyl Phosphorothioate Antisense Oligonucleotides: Experiences from Developing Exon Skipping Therapies for Duchenne Muscular Dystrophy. Nucleic Acid Therapeutics, 29, 305-322. [Google Scholar] [CrossRef] [PubMed]
|
|
[51]
|
Judge, A.D., Sood, V., Shaw, J.R., Fang, D., McClintock, K. and MacLachlan, I. (2005) Sequence-Dependent Stimulation of the Mammalian Innate Immune Response by Synthetic siRNA. Nature Biotechnology, 23, 457-462. [Google Scholar] [CrossRef] [PubMed]
|
|
[52]
|
Rickert, M., Strop, P., Lui, V., Melton-Witt, J., Farias, S.E., Foletti, D., et al. (2016) Production of Soluble and Active Microbial Transglutaminase in Escherichia coli for Site-Specific Antibody Drug Conjugation. Protein Science, 25, 442-455. [Google Scholar] [CrossRef] [PubMed]
|