E3泛素–蛋白连接酶UPL3 DNA序列揭示德阳柿和油柿为栽培柿的最近缘物种
Diospyros oleifera and D. deyangensis Are Revealed as the Closest Relatives to D. kaki by E3 Ubiquitin-Protein Ligase UPL3 DNA Sequences
DOI: 10.12677/HJAS.2018.86100, PDF,  被引量    科研立项经费支持
作者: 李文清, 解孝满, 鲁仪增:山东省林木种质资源中心,山东 济南;杨 勇:西北农林科技大学园艺学院,陕西 杨凌;常 青:中国科学院新疆生态与地理研究所,新疆 乌鲁木齐;靳晓白:中国科学院北京植物园,北京;索志立*:中国科学院植物研究所系统与进化植物学国家重点实验室,北京
关键词: 柿属植物E3泛素–蛋白连接酶DNA序列标记栽培品种起源遗传多样性Diospyros E3 Ubiquitin-Protein Ligase DNA Marker Cultivar Origin Genetic Diversity
摘要: 柿树的果实是著名传统食物。在过去几十年,由于城市化和环境破坏,柿树的种质资源受到威胁。柿科的柿属植物,在全世界约有400多种。为了保护和利用,急需评价柿属植物的遗传多样性。然而,由于形态和DNA标记数量少,灵敏度有限,柿属植物的鉴定仍然存在困难,开发分子鉴定方法仍然是全球的挑战。本文中,利用E3泛素–蛋白连接酶UPL3 DNA区域研发出新的DNA序列标记,可用于柿属植物分类。该DNA序列标记揭示,德阳柿和油柿是栽培柿的最近缘物种。对于深入理解栽培柿的起源、研究全球柿属植物的遗传多样性以及系统发育关系具有重要意义。
Abstract: Diospyros of the family Ebenaceae includes more than 400 species in the world. Fruits of persimmon plants are well-known traditional food. In the past decades, persimmon germplasm resources are threatened due to urbanization and environmental destruction. There is an urgent need to make an evaluation on the genetic diversity of Diospyros for conservation and utilization. However, due to the shortage and limited sensitivity of morphological and DNA markers, development of molecular identification tools for the Diospyros plants is still a global challenge. In this study, a new DNA marker from the E3 ubiquitin-protein ligase UPL3 gene region was found to be sensitive for discriminating Diospyros plants. Diospyros deyangensis and D. oleifera were revealed as the closest relatives to D. kaki by the E3 ubiquitin-protein ligase UPL3 DNA sequences. Our results would be of significant value for understanding the origin of cultivated persimmon cultivars and for future researches on global genetic diversity assessment and phylogeny of Diospyros plants.
文章引用:李文清, 杨勇, 解孝满, 鲁仪增, 常青, 靳晓白, 索志立. E3泛素–蛋白连接酶UPL3 DNA序列揭示德阳柿和油柿为栽培柿的最近缘物种[J]. 农业科学, 2018, 8(6): 657-673. https://doi.org/10.12677/HJAS.2018.86100

参考文献

[1] Lee, S., Michael, G.G. and Frank, W. (1996) Ebenaceae. In: Wu, Z.Y., Raven, P.H. and Hong, D.Y., Eds., Flora of China, Science Press/Botanical Garden Press, Beijing/Missouri/St. Louis, 215-234.
[2] Angiosperm Phylogeny Group (2016) An Update of the Angiosperm Phylogeny Group Classification for the Orders and Families of Flowering Plants: APG IV. Botanical Journal of the Linnean Society, 181, 1-20. [Google Scholar] [CrossRef
[3] Wang, R.Z., Yang, Y. and Li, G.C. (1997) Chinese Persimmon Germplasm Resources. Acta Horticulturae, 436, 43-50.
[4] Duangjai, S.,Wallnöffer, B., Samuel, R., et al. (2006) Generic Delimita-tion and Relationships in Ebenaceae sensu lato: Evidence from Six Plastid DNA Regions. American Journal of Botany, 93, 1808-1827. [Google Scholar] [CrossRef] [PubMed]
[5] Duangjai, S., Samuel, R., Munzinger, J., et al. (2009) A Multi-Locus Plastid Phylogenetic Analysis of the Pantropical Genus Diospyros (Ebenaceae), with an Emphasis on the Radiation and Biogeographic Origins of the New Caledonian Endemic Species. Molecular Phylogenetics and Evolution, 52, 602-620. [Google Scholar] [CrossRef] [PubMed]
[6] 张永芳, 胡超琼, 杨勇, 等. 柿属8种植物花粉形态观察[J]. 园艺学报, 2016, 43(6): 1167-1174.
[7] Zhang, Y.F., Yang, Y., Guo, J., et al. (2016) Taxonomic Status of Deyangshi Based on Chromosome Number and SRAP Markers. Scientia Horticulturae, 207, 57-64. [Google Scholar] [CrossRef
[8] Tang, D.L., Hu, Y., Zhang, Q.L., et al. (2014) Discriminant Analysis of “Jinzaoshi” from Persimmon (Diospyros kaki Thunb.; Ebenaceae): A Comparative Study Conducted Based on Morphological as Well as ITS and matK Sequence Analyses. Scientia Horticulturae, 168, 168-174. [Google Scholar] [CrossRef
[9] Mallavadhani, U.V., Panda, A.K. and Rao, Y.R. (1998) Phar-macology and Chemotaxonomy of Diospyros. Phytochemistry, 49, 901-951. [Google Scholar] [CrossRef
[10] Yang, Y., Jing, Z.B., Ruan, X.F., et al. (2015) Development of Simple Sequence Repeat Markers in Persimmon (Diospyros L.) and Their Potential Use in Related Species. Genetics and Molecular Research, 14, 609-618. [Google Scholar] [CrossRef
[11] Yang, Y., Yang, T.T. and Jing, Z.B. (2015) Genetic Diversity and Taxonomic Studies of Date Plum (Diospyros lotus L.) Using Morphological Traits and SCoT Markers. Biochemical Systematics and Ecology, 61, 253-259. [Google Scholar] [CrossRef
[12] Choi, Y.A., Tao, R., Yonemori, K., et al. (2003) Genomic Distribu-tion of Three Repetitive DNAs in Cultivated hexaploid Diospyrosspp. (D. kaki and D. virginiana) and Their Wild Rela-tives. Genes & Genetic Systems, 78, 301-308.
[13] 耿攀, 阮小凤, 杨勇, 等. 柿属植物种质资源遗传多样性的SSR分析[J]. 西北农林科技大学学报: 自然科学版, 2010, 38(12): 190-196. [Google Scholar] [CrossRef
[14] Jing, Z.B., Ruan, X.F., Wang, R.Z., et al. (2013) Genetic Diversity and Relationships between and within Persimmon (Diospyros L.) Wild Species and Cultivated Varieties by SRAP Markers. Plant Systematics and Evolution, 299, 1485-1492. [Google Scholar] [CrossRef
[15] Liang, J.J., Liang, Y.Q. and Fu, J.M. (2014) Genetic Relation-ships of Diospyros kaki and Related Diospyros Species Using Chloroplast DNA PCR-RFLP Markers. Acta Horticul-turae Sinica, 2474-2480.
[16] Suo, Z.L., Chen, L.N., Pei, D., et al. (2015) A New Nuclear DNA Marker from Ubiquitin Ligase Gene Region for Genetic Diversity Detection of Walnut Germplasm Resources. Biotechnology Reports, 5, 40-45. [Google Scholar] [CrossRef] [PubMed]
[17] Suo, Z.L., Li, W.Y., Jin, X.B., et al. (2016) A New Nuclear DNA Marker Revealing Both Microsatellite Variations and Single Nucleotide Polymorphic Loci: A Case Study on Classifica-tion of Cultivars in Lagerstroemia indica L. Journal of Microbial & Biochemical Technology, 8, 266-271. [Google Scholar] [CrossRef
[18] Suo, Z.L., Zhang, C.H., Zheng, Y.D., et al. (2012) Revealing Genetic Diversity of Tree Peonies at Micro-Evolution Level with Hyper-Variable Chloroplast Markers and Floral Traits. Plant Cell Reports, 31, 2199-2213. [Google Scholar] [CrossRef] [PubMed]
[19] Xu, C., Dong, W.P., Li, W.Q., et al. (2017) Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes. Frontiers in Plant Science, 8, 15. [Google Scholar] [CrossRef] [PubMed]
[20] Dong, W.P., Xu, C., Li, D.L., et al. (2016) Comparative Analysis of the Complete Chloroplast Genome Sequences in Psammophytic Haloxylon Species (Amaranthaceae). PeerJ, 4, e2699. [Google Scholar] [CrossRef] [PubMed]
[21] Fu, J.M., Liu, H.M., Hu, J.J., et al. (2016) Five Complete Chloroplast Ge-nome Sequences from Diospyros: Genome Organization and Comparative Analysis. PLoS ONE, 11, e0159566. [Google Scholar] [CrossRef] [PubMed]
[22] Dong, W.P., Liu, J., Yu, J., et al. (2012) Highly Variable Chlo-roplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding. PLoS ONE, 7, e35071.
[23] Dong, W.P., Chao, X., Li, W.Q., et al. (2017) Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences. Frontiers in Plant Science, 8, 1148. [Google Scholar] [CrossRef] [PubMed]
[24] Ganoth, A., Tsfadia, Y. and Wiener, R. (2013) Ubiquitin: Molecular Modeling and Simulations. Journal of Molecular Graphics and Modelling, 46, 29-40. [Google Scholar] [CrossRef] [PubMed]
[25] Marin, I. (2013) Evolution of Plant Hect Ubiquitin Ligases. PLoS ONE, 8, e68536. [Google Scholar] [CrossRef] [PubMed]
[26] Tamura, K., Stecher, G., Peterson, D., et al. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30, 2725-2729. [Google Scholar] [CrossRef] [PubMed]
[27] Ng, F.S.P. (1978) Diospyros roxburghii and the Origin of Diospyros kaki. The Malaysian Forester, 41, 43-50.
[28] Yonemori, K., Kanzaki, S., Parfitt, D.E., et al. (1998) Phylogenetic Rela-tionship of Diospyros kaki (Persimmon) to Diospyros spp. (Ebenaceae) of Thailand and Four Temperate Zone Diospyros spp. from an Analysis of RFLP Variation in Amplified cpDNA. Genome, 41, 173-182. [Google Scholar] [CrossRef