插穗年龄对毛白杨不定根形成影响的转录组分析
Transcriptome Analysis of the Effect of Cutting Age on Adventitious Root Formation of Populus
DOI: 10.12677/BR.2019.83038, PDF,  被引量    科研立项经费支持
作者: 田知秋, 洪汉辉, 康向阳, 汪晓峰, 薛 华:北京林业大学,北京林业大学生物科学与技术学院,林木育种国家工程实验室,北京
关键词: 杨树插穗成熟效应不定根转录组Populus Cuttings Age Effect Adventitious Roots Transcriptome
摘要: 为了探究插穗年龄对不定根生根的影响,本研究以1、2、3年生毛白杨杂交三倍体新品种“北林雄株2号”的嫩枝插穗为研究材料,扦插五天后进行转录组测序分析,共检测到5153个差异表达基因。GO分析显示,上调基因主要富集在线粒体呼吸、氧化磷酸化和类黄酮合成等过程,下调基因主要富集在油菜素内酯合成、水杨酸信号转导和赤霉素合成等途径。KEGG结果显示,差异基因在信号转导、能量代谢、翻译、糖代谢、其他次生代谢产物合成、氨基酸代谢和运输等通路富集。最后,对三个比较组中5个共下调基因和4个共上调基因与不定根形成的关系进行了讨论。转录组分析说明随着母株年龄的增长,不定根形成相关基因表达谱发生变化,导致插穗不定根生根受到抑制。
Abstract: In order to explore the effect of mother plant age on adventitious rooting, the five-day-old stem cuttings of a 1-, 2- and 3-year-old hybrid triploid cultivar Populus “Beilinxiongzhu 2” were used as materials for transcriptome sequencing analysis. Significant differentially expressed genes were screened, and GO enrichment analysis and KEGG enrichment analysis were carried out for differentially expressed genes. A total of 5153 differentially expressed genes were identified. Through GO analysis of three comparative groups, the up-regulated genes were mainly concentrated in mitochondrial respiration, oxidative phosphorylation and flavonoid biosynthesis. The down-regulated genes were mainly concentrated in the synthesis of brassinolide, salicylic acid-mediated signaling pathway and gibberellin biosynthesis. KEGG analysis showed that differentially expressed genes were enriched in signal transduction, energy metabolism, translation, sugar metabolism, biosynthesis of other secondary metabolites, amino acid metabolism and transportation. Finally, the relationship between adventitious root formation with 5 down-regulated genes and 4 up-regulated genes was discussed. The transcriptome analysis showed that the expression profiles of adventitious root formation related genes changed with increased age of the mother plant, which led to the inhibition of adventitious root formation in Populus cuttings.
文章引用:田知秋, 洪汉辉, 康向阳, 汪晓峰, 薛华. 插穗年龄对毛白杨不定根形成影响的转录组分析[J]. 植物学研究, 2019, 8(3): 293-306. https://doi.org/10.12677/BR.2019.83038

参考文献

[1] 铁铮, 程武. 北林大“杨树双雄”告别飞絮顽症[N]. 中国绿色时报, 2015-12-4(003).
[2] 赵红霞. “北林雄株”1、2号生正逢时[N]. 中国花卉报, 2015-12-3(002).
[3] 许永飞, 吕兵兵. 山东冠县: 雄株无絮且生长快[N]. 农民日报, 2016-4-11(006).
[4] 康向阳. 关于无性系林业若干问题的认识和建议——以杨树为例[J]. 北京林业大学学报, 2017, 39(9): 1-7.
[5] 朱之悌, 盛莹萍. 论树木的老化——幼年性、成年性、相互关系及其利用[J]. 北京林业大学学报, 1992, 14(3): 92-104.
[6] Bolger, A.M., Lohse, M. and Usadel, B. (2014) Trimmomatic: A Flexible Trimmer for Illumina Sequence Data. Bioinformatics, 30, 2114-2120. [Google Scholar] [CrossRef] [PubMed]
[7] Grabherr, M.G., Haas, B.J. and Yassour, M. (2011) Trinity: Reconstructing a Full-Length Transcriptome without a Genome from RNA-Seq Data. Nature Biotechnology, 29, 644-652. [Google Scholar] [CrossRef] [PubMed]
[8] Buchfink, B., Xie, C. and Huson, D.H. (2015) Fast and Sensitive Protein Alignment Using DIAMOND. Nature Methods, 12, 59-60. [Google Scholar] [CrossRef] [PubMed]
[9] Mistry, J., Finn, R.D. and Eddy, S.R. (2013) Challenges in Homology Search: HMMER3 and Convergent Evolution of Coiled-Coil Regions. Nucleic Acids Research, 41, e121. [Google Scholar] [CrossRef] [PubMed]
[10] Trapnell, C., Williams, B.A. and Pertea, G. (2010) Transcript Assembly and Quantification by RNA-Seq Reveals Unannotated Transcripts and Isoform Switching during Cell Differentiation. Nature Biotechnology, 28, 511-515. [Google Scholar] [CrossRef] [PubMed]
[11] Langmead, B. and Salzberg, S.L. (2012) Fast Gapped-Read Alignment with Bowtie 2. Nature Methods, 9, 357-359. [Google Scholar] [CrossRef] [PubMed]
[12] Roberts, A. and Pachter, L. (2013) Streaming Fragment Assignment for Real-Time Analysis of Sequencing Experiments. Nature Methods, 10, 71-73. [Google Scholar] [CrossRef] [PubMed]
[13] Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. and Wold, B. (2008) Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Nature Methods, 5, 621-628. [Google Scholar] [CrossRef] [PubMed]
[14] Trupiano, D., Yordanov, Y., Regan, S., Meilan, R., Tschaplinski, T. and Scippa, G.S. (2013) Identification, Characterization of an AP2/ERF Transcription Factor That Promotes Adventitious, Lateral Root Formation in Populus. Planta, 238, 271-282. [Google Scholar] [CrossRef] [PubMed]
[15] Werck-reichhart, D. (1995) Cytochromes P450 in Phenylpropanoid Metabolism. Drug Metabolism and Drug Interactions, 12, 221-243. [Google Scholar] [CrossRef
[16] 孔祥翔, 陈哲, 龚明. 活性氧在环境胁迫诱导的植物细胞程序性死亡中的作用[J]. 安徽农学通报, 2009, 15(7): 74-76.
[17] 朱文廉, 张建国. 油菜素内酯促进绿豆上胚轴伸长与蛋白质和核酸合成的关系[J]. 植物学报, 1994, 36(8): 607-613.
[18] 王金祥, 严小龙, 潘瑞炽. 不定根形成与植物激素的关系[J]. 植物生理学报, 2005, 41(2): 133-142.
[19] Blakesley, D., Weston, G.D. and Hall, J.F. (1991) The Role of Endogenous Auxin in Root Initiation. I. Evidence from Studies on Auxin Application and Analysis of Endogenous Levels. Plant Growth Regulation, 10, 341-353. [Google Scholar] [CrossRef
[20] 杨伟. 活性氧和Ca2+在脱落酸和水杨酸诱导的绿豆下胚轴不定根发生过程中的作用[D]: [博士学位论文]. 南京: 南京农业大学, 2012.
[21] 魏丽, 蒋湘宁, 裴东. 不定根发生分子调控机制的研究进展[J]. 生命科学, 2006, 18(3): 266-272.
[22] 张鹏, 王飞, 张列峰, 芮琪, 徐朗莱. 丝氨酸内肽酶在黄瓜叶片衰老中的作用[J]. 植物生理与分子生物学学报, 2006, 32(5): 593-599.
[23] Ahkami, A.H., Li-schewski, S. and Haensch, K.T. (2009) Molecular Physiology of Adventitious Root Formation in Petunia Hybrida Cuttings: Involvement of Wound Response and Primary Metabolism. New Phytologist, 181, 613-625. [Google Scholar] [CrossRef] [PubMed]