循环游离DNA在临床疾病中的研究进展
Research Progress of Circulation Cell-Free DNA in Clinical Diseases
DOI: 10.12677/ACM.2022.122210, PDF,   
作者: 周 钦:青海大学,青海 西宁 ;王海久*:青海大学附属医院肝胆胰外科,青海 西宁
关键词: 循环游离DNA液体活检疾病临床应用Circulating Free DNA liquid Biopsy Disease Clinical Application
摘要: 循环游离DNA (cfDNA)作为一种非侵入性疾病生物标记物,已成为一个有吸引力的研究课题。cfDNA目前可以在人体不同体液中(血液、尿液、唾液等)检测到。目前通过“下一代”测序(NGS)方法以及聚合酶链式反应(PCR)和NGS的组合,靶向深度测序已被用于同时识别多个基因中的特定基因组区域或新的体细胞变体。新分子技术的快速发展促进了cfDNA的研究和鉴定,为临床相关疾病的检测、临床决策和疾病的预后提供新的方法。目前,cfDNA可以应用于恶性肿瘤、产前筛查、心血管疾病、移植医学、自身免疫性疾病、寄生虫病等多种疾病领域的早期筛查和病情评估、监测等临床应用。本文就cfDNA的生物学特性及其在临床疾病中的应用作一综述,以期为临床疾病的诊治提供新的视角。
Abstract: Circulating free DNA (cfDNA), as a non-invasive disease biomarker, has become an attractive research topic. cfDNA can be detected in different body fluids (blood, urine, saliva, etc.). Currently, targeted deep sequencing has been used to simultaneously identify specific genomic regions or novel somatic variants in multiple genes through “next generation” sequencing (NGS) methods and a combination of polymerase chain reaction (PCR) and NGS. The rapid development of new molecular technologies has promoted the study and identification of cfDNA, providing new methods for the detection, clinical decision-making and prognosis of clinically relevant diseases. At present, cfDNA can be applied to clinical applications such as early screening, disease evaluation and monitoring in the fields of malignant tumors, prenatal screening, cardiovascular diseases, transplantation medicine, autoimmune diseases, parasitic diseases and other diseases. This paper reviews the biological characteristics of cfDNA and its application in clinical diseases, in order to provide a new perspective for the diagnosis and treatment of clinical diseases.
文章引用:周钦, 王海久. 循环游离DNA在临床疾病中的研究进展[J]. 临床医学进展, 2022, 12(2): 1446-1454. https://doi.org/10.12677/ACM.2022.122210

参考文献

[1] Mandel, P. and Metais, P. (1948) Comptesrendus des seances de la Societe de biologie etde sesfiliales. Comptesrendus des séances de la Société de biologie et de sesfiliales, 142, 241-243.
[2] Haber, D.A. and Velculescu, V.E. (2014) Blood-Based Analyses of Cancer: Circulating Tumor Cells and Circulating Tumor DNA. Cancer Discovery, 4, 650-661. [Google Scholar] [CrossRef
[3] Cicchillitti, L., Corrado, G., De Angeli, M., et al. (2017) Circulating Cell-Free DNA Content as Blood Based Biomarker in Endometrial Cancer. Oncotarget, 8, 115230-115243. [Google Scholar] [CrossRef] [PubMed]
[4] Fleischhacker, M. and Schimdt, B. (2007) Circulating Nucleic Acids (CNAs) and Cancer—A Survey. Biochimica et Biophysica Acta, 1775, 181-232. [Google Scholar] [CrossRef] [PubMed]
[5] Jahr, S., Hentze, H., Englisch, S., et al. (2001) DNA Fragments in the Blood Plasma of Cancer Patients: Quantitations and Evidence for their Origin from Apoptotic and Necrotic Cells. Cancer Research, 61, 1659-1665.
[6] Stroun, M., Maurice, P., Vasioukhin, V., et al. (2000) The Origin and Mechanism of Circulating DNA. Annals of the New York Academy of Sciences, 906, 161-168. [Google Scholar] [CrossRef] [PubMed]
[7] Stroun, M., Lyautey, J., Lederrey, C., et al. (2001) About the Possible Origin and Mechanism of Circulating DNA Apoptosis and Active DNA Release. Clinica Chimica Acta, 313, 139-142. [Google Scholar] [CrossRef
[8] Canzoniero, J.V. and Park, B.H. (2016) Use of Cell Free DNA in Breast Oncology. Biochimica et Biophysica Acta, 1865, 266-274. [Google Scholar] [CrossRef] [PubMed]
[9] Stotzer, O.J., Lehner, J., Fersching-Gierlich, D., et al. (2014) Diagnostic Relevance of Plasma DNA and DNA Integrity for Breast Cancer. Tumor Biology, 35, 1183-1191. [Google Scholar] [CrossRef] [PubMed]
[10] Lui, Y.Y., Chik, K.W., Chiu, R.W., et al. (2002) Predominant Hematopoietic Origin of Cell-Free DNA in Plasma and Serum after Sex-Mismatched Bone Marrow Transplantation. Clinical Chemistry, 48, 421-427. [Google Scholar] [CrossRef
[11] Elshimali, Y.I., Khaddour, H., Sarkissyan, M., et al. (2013) The Clinical Utilization of Circulating Cell Free DNA (CCFDNA) in Blood of Cancer Patients. International Journal of Molecular Sciences, 14, 18925-18958. [Google Scholar] [CrossRef] [PubMed]
[12] Swarup, V. and Rajeswari, M.R. (2007) Circulating (Cell-Free) Nucleic Acids—A Promising, Non-Invasive Tool for Early Detection of Several Human Diseases. FEBS Letters, 581, 795-799. [Google Scholar] [CrossRef] [PubMed]
[13] Diaz, L.A. and Bardelli, A. (2014) Liquid Biopsies: Genotyping Circulating Tumor DNA. Journal of Clinical Oncology, 32, 579-586. [Google Scholar] [CrossRef
[14] Giacona, M.B., et al. (1998) Cell-Free DNA in Human Blood Plasma: Length Measurements in Patients with Pancreatic Cancer and Healthy Controls. Pancreas, 17, 89-97. [Google Scholar] [CrossRef] [PubMed]
[15] Tsumita, T. and Iwanaga, M. (1963) Fate of Injected Deoxyribonucleic Acid in Mice. Nature, 198, 1088-1089. [Google Scholar] [CrossRef] [PubMed]
[16] Lo, Y.M., Zhang, J., Leung, T.N., et al. (1999) Rapid Clearance of Fetal DNA from Maternal Plasma. The American Journal of Human Genetics, 64, 218-224. [Google Scholar] [CrossRef] [PubMed]
[17] Snyder, M.W., Kircher, M., Hill, A.J., et al. (2016) Cell-Free DNA Comprises an in Vivo Nucleosome Footprint That Informs Its Tissues-of-Origin. Cell, 164, 57-68. [Google Scholar] [CrossRef] [PubMed]
[18] Nagata, S., Nagase, H., Kawane, K., et al. (2003) Degradation of Chromosomal DNA during Apoptosis. Cell Death & Differentiation, 10, 108-116. [Google Scholar] [CrossRef] [PubMed]
[19] Holdenrieder, S. and Stieber, P. (2004) Apoptotic Markers in Cancer. Clinical Biochemistry, 37, 605-617. [Google Scholar] [CrossRef] [PubMed]
[20] Nagata, S. (2005) DNA Degradation in Development and Programmed Cell Death. Annual Review of Immunology, 23, 853-875. [Google Scholar] [CrossRef] [PubMed]
[21] Leon, S.A., Shapiro, B., Sklaroff, D.M., et al. (1977) Free DNA in the Serum of Cancer Patients and the Effect of Therapy. Cancer Research, 37, 646-650.
[22] Shapiro, B., Chakrabarty, M., Cohn, E.M., et al. (1983) Determination of Circulating DNA Levels in Patients with Benign or Malignant Gastrointestinal Disease. Cancer, 51, 2116-2120. [Google Scholar] [CrossRef
[23] Tan, E.M., Schur, P.H., Carr, R.I., et al. (1966) Deoxybonucleic Acid (DNA) and Antibodies to DNA in the Serum of Patients with Systemic Lupus Erythematosus. Journal of Clinical Investigation, 45, 1732-1740. [Google Scholar] [CrossRef
[24] Vasioukhin, V., Anker, P., Maurice, P., et al. (1994) Point Mutations of the N-Ras Gene in the Blood Plasma DNA of Patients with Myelodysplastic Syndrome or Acute Myelogenous Leukaemia. British Journal of Haematology, 86, 774-779. [Google Scholar] [CrossRef] [PubMed]
[25] Sorenson, G.D., Pribish, D.M., Valone, F.H., et al. (1994) Soluble Normal and Mutated DNA Sequences from Single-Copy Genes in Human Blood. Cancer Epidemiology, Biomarkers & Prevention, 3, 67-71.
[26] Lo, Y.M., Corbetta, N., Chamberlain, P.F., et al. (1997) Presence of Fetal DNA in Maternal Plasma and Serum. The Lancet, 350, 485-487. [Google Scholar] [CrossRef
[27] Rainer, T.H., Wong, L.K., Lam, W., et al. (2003) Prognostic Use of Circulating Plasma Nucleic Acid Concentrations in Patients with Acute Stroke. Clinical Chemistry, 49, 562-569. [Google Scholar] [CrossRef] [PubMed]
[28] Chang, Y., Chia, R.H., Wu, T.L., et al. (2003) Elevated Cell-Free DNA Detected in Patients with Myocardial Infarction. Clinica Chimica Acta, 327, 95-101. [Google Scholar] [CrossRef
[29] Frank, O.M. (2016) Circulating Cell-Free DNA Differentiates Severity of Inflammation. Biological Research for Nursing, 18, 477-488. [Google Scholar] [CrossRef] [PubMed]
[30] Togneri, F.S., Ward, D.G., Foster, J.M., Devall, A.J., et al. (2016) Genomic Complexity of Urothelial Bladder Cancer Revealed in Urinary cfDNA. European Journal of Human Genetics, 24, 1167-1174. [Google Scholar] [CrossRef] [PubMed]
[31] Birkenkamp-Demtröder, K., Nordentoft, I., Christensen, E., et al. (2016) Genomic Alterations in Liquid Biopsies from Patients with Bladder Cancer. European Urology, 70, 75-82. [Google Scholar] [CrossRef] [PubMed]
[32] Menon, M.P., Pittaluga, S. and Jaffe, E.S. (2012) The Histological and Biological Spectrum of Diffuse Large B-Cell Lymphoma in the World Health Organization Classification. The Cancer Journal, 18, 411-420. [Google Scholar] [CrossRef
[33] 李茂, 徐娟, 曹迪, 蒋昱, 徐才刚. 弥漫大B细胞淋巴瘤血浆循环游离DNA水平的动态监测及临床意义[J]. 四川大学学报(医学版), 2018, 49(1): 113-115+139. [Google Scholar] [CrossRef
[34] 王念跃, 马超, 李传燕, 等. 磁性纳米颗粒的制备及在全血DNA提取中的应用[J]. 临床检验杂志, 2016, 34(3): 169-172.
[35] Cai, Z., Chen, G., Zeng, Y., Dong, X., et al. (2019) Comprehensive Liquid Profiling of Circulating Tumor DNA and Protein Biomarkers in Long-Term Follow-Up Patients with Hepatocellular Carcinoma. Clinical Cancer Research, 25, 5284-5294. [Google Scholar] [CrossRef
[36] Jiang, P., Chan, C.W., Chan, K.C., et al. (2015) Lengthening and Shortening of Plasma DNA in Hepatocellular Carcinoma Patients. Proceedings of the National Academy of Sciences USA, 112, E1317-E1325. [Google Scholar] [CrossRef] [PubMed]
[37] 阎其均, 翁羽, 朱付英. 外周血CTCs、cfDNA联合检测在肝癌早期筛查中的应用价值分析[J]. 临床输血与检验, 2020, 22(4): 429-433.
[38] 黄帅帅, 岑东. 循环游离核酸分子标志物在肾细胞癌诊治中的研究进展[J]. 现代实用医学, 2021, 33(8): 986-989+992.
[39] Marur, S. and Forastiere, A.A. (2016) Head and Neck Squamous Cell Carcinoma: Update on Epidemiology, Diagnosis, and Treatment. Mayo Clinic Proceedings, 91, 386-396. [Google Scholar] [CrossRef] [PubMed]
[40] Mermod, M., Tolstonog, G., Simon, C., et al. (2016) Extracapsular Spread in Head and Neck Squamous Cell Carcinoma: A Systematic Review and Meta-Analysis. Oral Oncology, 62, 60-71. [Google Scholar] [CrossRef] [PubMed]
[41] Mazurek, A.M., Rutkowski, T., Fiszer-Kierzkowska, A., et al. (2016) Assessment of the Total cfDNA and HPV16/18 Detection in Plasma Samples of Head and Neck Squamous Cell Carcinoma Patients. Oral Oncology, 54, 36-41. [Google Scholar] [CrossRef] [PubMed]
[42] Wang, Y., Springer, S., Mulvey, C.L., et al. (2015) Detection of Somatic Mutations and HPV in the Saliva and Plasma of Patients with Head and Neck Squamous Cell Carcinomas. Science Translational Medicine, 7, 293ra104.
[43] Zhang, W. (2014) TCGA Divides Gastric Cancer into Four Molecular Subtypes: Implications for Individualized Therapeutics. The Chinese Journal of Cancer, 33, 469-470.
[44] Chen, W., Zheng, R., Zeng, H. and Zhang, S. (2015) The Updated Incidences and Mortalities of Major Cancers in China, 2011. Chinese Journal of Cancer, 34, 502-507. [Google Scholar] [CrossRef] [PubMed]
[45] Nishida, X. and Hirota, S. (2000) Biological and Clinical Review of Stromal Tumors in the Gastrointestinal Tract. Histology and Histopathology, 15, 1293-1301.
[46] Jing, R., Cui, M., Wang, H., et al. (2013) Cell-Free DNA: Characteristics, Detection and Its Applications in Myocardial Infarction. Current Pharmaceutical Design, 19, 5135-5145. [Google Scholar] [CrossRef] [PubMed]
[47] Antonatos, D., Patsilinakos, S., Spanodimos, S., et al. (2006) Cell-Free DNA Levels as a Prognostic Marker in Acute Myocardial Infarction. Annals of the New York Academy of Sciences, 1075, 278-281. [Google Scholar] [CrossRef] [PubMed]
[48] Snyder, T.M., Khush, K.K., Valantine, H.A., et al. (2011) Universal Noninvasive Detection of Solid Organ Transplant Rejection. Proceedings of the National Academy of Sciences of the United States of America, 108, 6229-6234. [Google Scholar] [CrossRef] [PubMed]
[49] Barnett, E.V. (1968) Detection of Nuclear Antigens (DNA) in Normal and Pathologic Human fluids by Quantitative Complement Fixation. Arthritis & Rheumatology, 11, 407-417. [Google Scholar] [CrossRef] [PubMed]
[50] Koffler, D., Agnello, V., Winchester, R. and Kunkel, H.G. (1973) The Occurrence of Single-Stranded DNA in the Serum of Patients with Systemic Lupus Erythematosus and Other Diseases. Journal of Clinical Investigation, 52, 198-204. [Google Scholar] [CrossRef
[51] Chen, J.A., Meister, S., Urbonaviciute, V., et al. (2007) Sensitive Detection of Plasma/Serum DNA in Patients with Systemic Lupus Erythematosus. Autoimmunity, 40, 307-310.
[52] Truszewska, A., Foroncewicz, B. and Paczek, L. (2017) The Role and Diagnostic Value of Cell-Free DNA in Systemic Lupus Erythematosus. Clinical and Experimental Rheumatology, 35, 330-336.
[53] Dunaeva, M., Buddingh, B.C., Toes, R.E., Luime, J.J., Lubberts, E. and Pruijn, G.J. (2015) Decreased Serum Cell-Free DNA Levels in Rheumatoid Arthritis. Autoimmunity Highlights, 6, 23-30. [Google Scholar] [CrossRef] [PubMed]
[54] Fan, H., Gai, W., Zhang, L., Ma, Y., Wang, H., et al. (2021) Parasite Circulating Cell-Free DNA in the Blood of Alveolar Echinococcosis Patients as a Diagnostic and Treatment-Status Indicator. Clinical Infectious Diseases, 73, e246-e251. [Google Scholar] [CrossRef] [PubMed]
[55] Weerakoon, K.G. and McManus, D.P. (2016) Cell-Free DNA as a Diagnostic Tool for Human Parasitic Infections. Trends in Parasitology, 32, 378-391. [Google Scholar] [CrossRef] [PubMed]
[56] Gal, S., Fidler, C., Turner, S., Lo, Y.M., Roberts, D.J. and Wainscoat, J.S. (2001) Detection of Plasmodium falciparum DNA in Plasma. Annals of the New York Academy of Sciences, 945, 234-238. [Google Scholar] [CrossRef] [PubMed]
[57] Ngotho, M., Kagira, J.M., Gachie, B.M., et al. (2015) Loop Mediated Isothermal Amplification for Detection of Trypanosoma brucei Gambiense in Urine and Saliva Samples in Nonhuman Primate Model. BioMed Research International, 2015, Article ID: 867846. [Google Scholar] [CrossRef] [PubMed]
[58] Chaya, D. and Parija, S.C. (2014) Performance of Polymerase Chain Reaction for the Diagnosis of Cystic Echinococcosis Using Serum, Urine, and Cyst Fluid Samples. Tropical Parasitology, 4, 43-46. [Google Scholar] [CrossRef] [PubMed]
[59] Wagner, J. (2012) Free DNA—New Potential Analyte in Clinical Laboratory Diagnostics. Biochemia Medica (Zagreb), 22, 24-38. [Google Scholar] [CrossRef
[60] Kotsch, K., Mashreghi, M.F., Bold, G., et al. (2004) Enhanced Granulysin mRNA Expression in Urinary Sediment in Early and Delayed Acute Renal Allograft Rejection. Transplantation, 77, 1866-1875. [Google Scholar] [CrossRef
[61] El Messaoudi, S., Rolet, F., Mouliere, F., et al. (2013) Circulating Cell Free DNA: Preanalytical Considerations. Clinica Chimica Acta, 424, 222-230. [Google Scholar] [CrossRef] [PubMed]