对虾传染性皮下及造血组织坏死病毒(IHHNV) LAMP检测方法的建立
Establishment of a LAMP Assay for Detection of Infectious Hypodermal and Hematopoietic Necrosis Virus (IHHNV)
DOI: 10.12677/OJFR.2024.111004, PDF,  被引量    科研立项经费支持
作者: 孙 妍*, 董学旺, 魏俊利, 陈浩楠, 刘 群, 张 丽, 包海岩:天津市动物疫病预防控制中心,天津;天津市水生动物疫病监测中心,天津;顾中华:天津市农业发展服务中心,天津
关键词: 对虾传染性皮下及造血组织坏死病毒环介导等温扩增检测方法Infectious Hypodermal and Hematopoietic Necrosis Virus (IHHNV) Loop-Mediated Isothermal Amplification (LAMP) Detection Method
摘要: 本研究建立了一种检测对虾传染性皮下及造血组织坏死病毒(Infectious hypodermal and hematopoietic necrosis virus, IHHNV)的环介导等温扩增法(Loop-mediated isothermal amplification, LAMP)。根据GenBank中注册的IHHNV-VN基因序列设计出6条特异性引物,成功建立了IHHNV-LAMP检测方法。该方法检出限为6 copies/μl,且与对虾其它常见疫病均无交叉反应。采用LAMP和常规PCR方法对40份具有典型IHHNV感染症状的对虾样品进行检测,结果显示:LAMP方法的阳性检出率为97.5%,PCR方法的阳性检出率为85%,表明建立的IHHNV-LAMP方法不仅具有高灵敏度、高特异性而且还有较高的准确性,能够为对虾传染性皮下及造血组织坏死病的早期快速诊断提供技术支撑。
Abstract: This study established a loop-mediated isothermal amplification (LAMP) method for detecting Infectious hypodermal and hematopoietic necrosis virus (IHHNV) in shrimp. Six specific primers were designed based on the registered IHHNV-VN gene sequence in GenBank, and a successful IHHNV-LAMP detection method was established. The detection limit of this method is 6 copies/μl. And there is no cross reaction with other common diseases of shrimp. 40 shrimp samples with typical symptoms of IHHNV infection were detected using LAMP and conventional PCR methods. The results showed that the positive detection rate of LAMP method was 97.5%, and the positive detection rate of PCR method was 85%. This indicates that the established IHHNV-LAMP method not only has high sensitivity and specificity, but also high accuracy, which could provide technical support for the early and rapid diagnosis of Infectious hypodermal and hematopoietic necrosis virus in shrimp.
文章引用:孙妍, 董学旺, 魏俊利, 顾中华, 陈浩楠, 刘群, 张丽, 包海岩. 对虾传染性皮下及造血组织坏死病毒(IHHNV) LAMP检测方法的建立[J]. 水产研究, 2024, 11(1): 30-37. https://doi.org/10.12677/OJFR.2024.111004

参考文献

[1] Lightner, D.V., Redman, R.M. and Bell, T.A. (1983) Infectious Hypodermal and Hematopoietic Necrosis, a Newly Recognized Virus Disease of Penaeid Shrimp. Invertebrate Pathology, 42, 62-70. [Google Scholar] [CrossRef] [PubMed]
[2] OIE, World Organization for Animal Health (2014) Diagnostic Manual for Aquatic Animal Diseases, Pairs, 119-137.
[3] Lightner, D.V., Redman, R.M. and Bell, T.A. (1983) Detection of IHHN Virus in Penaeus stylirostris and Penaeus vannamei Imported into Hawaii. Journal of the World Aquaculture Society, 14, 212-225. [Google Scholar] [CrossRef
[4] Hsieha, C.Y., Chuanga, P.C., Chenb, L.C., et al. (2006) Infectious Hypodermal and Haematopoietic Necrosis Virus (IHHNV) Infections in Giant Freshwater Prawn, Macrobrachium rosenbergii. Aquaculture, 258, 73-79. [Google Scholar] [CrossRef
[5] Kalagayan, H., Godin, D., Kanna, R., et al. (1991) IHHN Virus as an Etiological Factor in Runt-Deformity Syndrome (RDS) of Juvenile Penaeus vannamei Cultured in Hawaii. Journal of the World Aquaculture Society, 22, 235-243. [Google Scholar] [CrossRef
[6] Primavera, J.H. and Quinitio, E.T. (2000) Runt-Deformity Syndrome in Cultured Giant Tiger Prawn Penaeus monodon. Journal of Crustacean Biology, 20, 796-802. [Google Scholar] [CrossRef
[7] Lightner, D.V. (1996) A Handbook of Shrimp Pathology and Diagnostic Procedures of Disease of Cultured Penaeid Shrimp. World Aquaculture Society, Baton Rouge, 304.
[8] 全国水产标准化技术委员会. GB/T 25878-2010对虾传染性皮下及造血组织坏死病毒(IHHNV)检测PCR法[S]. 北京: 中国标准出版社, 2010.
[9] Bonami, J.R., Trumper, B., Mari, J., et al. (1990) Purification and Characterization of the Infectious Hypodermal and Haematopoietic Nercrosis Virus of Penaeid Shrimps. Journal of General Virology, 71, 2657-2664. [Google Scholar] [CrossRef] [PubMed]
[10] 袁颜颜, 杨冰, 万晓媛, 等. 采用OIE标准检测养殖对虾中传染性皮下及造血组织坏死病毒(IHHNV)的PCR检出类型[J]. 渔业科学进展, 2015, 36(1): 67-73.
[11] Tang, K.F. and Lightner, D.V. (2002) Low Sequence Variation among Isolates of Infectious Hypodermal and Hematopoietic Nercrosis Virus (IHHNV) Originating from Hawaii and America. Diseases of Aquatic Organisms, 49, 93-97. [Google Scholar] [CrossRef] [PubMed]
[12] Tang, K.F. and Lightner, D.V. (2006) Infectious Hypodermal and Hematopoietic Necrosis (IHHNV) in the Genome of the Black Tiger Prawn Penaeus monodon from Africa and Australia. Virus Research, 118, 185-191. [Google Scholar] [CrossRef] [PubMed]
[13] Saksmerprome, V., Puiprom, O., Noonin, C., et al. (2010) Detection of Infectious Hypodermal and Haematopoietic Necrosis Virus (IHHNV) in Farmed Australian Penaeus monodon by PCR Analysis and DNA Sequencing. Aquaculture, 298, 190-193. [Google Scholar] [CrossRef
[14] 何琳, 徐海圣, 王美珍, 等. LAMP快速检测对虾IHHNV的方法与应用[J]. 病毒学报, 2010, 26(6): 490-495.
[15] Arunrut, N., Prombun, P., Saksmerprome, V., et al. (2011) Rapid and Sensitive Detection of Infectious Hypodermal and Hematopoietic Necrosis Virus by Loop-Mediated Isothermal Amplification Combined with a Lateral Flow Dipstick. Journal of Virological Methods, 171, 21-25. [Google Scholar] [CrossRef] [PubMed]
[16] 葛辉, 吴建绍, 杨章武, 等. 凡纳滨对虾传染性皮下及造血组织坏死病毒(IHHNV)可视化环介导等温扩增(LAMP)技术方法的优化与应用[J]. 渔业研究, 2021, 43(4): 357-365.
[17] 李红梅, 江晓, 任春华, 等. 对虾传染性皮下及造血组织坏死病毒实时荧光LAMP检测方法的建立及应用[J]. 热带生物学报, 2016, 70(3): 307-313.
[18] 俞焕腾. 实时荧光定量LAMP技术检测四种对虾病原微生物方法研究[D]: [硕士学位论文]. 杭州: 中国计量大学, 2019.