生信分析胃癌化疗耐药嘌呤代谢关键基因及预后关系
Bioinformatics Analysis of Purine Metabolism Key Genes in Gastric Cancer Chemotherapy Resistance and Prognosis
DOI: 10.12677/acm.2025.153708, PDF,   
作者: 邵 运, 周连帮*:安徽医科大学第二附属医院普外科,安徽 合肥
关键词: 胃癌化疗耐药嘌呤代谢IMPDH2Gastric Cancer Chemotherapy Resistance Purine Metabolism IMPDH2
摘要: 目的:探讨胃癌化疗耐药形成机制中嘌呤代谢通路关键基因的作用及其调控机制,并评估其临床预测价值。方法:通过生物信息学分析筛选化疗耐药相关差异基因,结合功能富集分析确定嘌呤代谢通路的关键基因,并验证其表达水平及与患者预后的关系。同时,探索其可能的调控机制,并构建基于关键基因的预后模型。结果:化疗耐药组中嘌呤代谢通路活性显著增强,IMPDH2高表达且与胃癌患者较差预后相关。进一步分析提示c-Myc可能作为IMPDH2的上游转录因子,而KRAS通过MAPK通路上调c-Myc,推测存在c-Myc-IMPDH2-KRAS闭环调控机制。基于IMPDH2及相关基因构建的预后模型,能够有效预测胃癌患者的5年生存率和无病生存率。结论:本研究发现IMPDH2在胃癌化疗耐药中起关键作用,并推测其通过c-Myc-IMPDH2-KRAS闭环机制促进嘌呤代谢重编程及化疗耐药。构建的预后模型具有良好的预测能力,为胃癌精准治疗和个体化管理提供了新思路。
Abstract: Objective: To explore the role and regulatory mechanisms of key genes in the purine metabolism pathway involved in gastric cancer chemotherapy resistance and to evaluate their clinical prognostic value. Methods: Bioinformatics analysis was used to identify chemotherapy resistance-related differentially expressed genes. Functional enrichment analysis was performed to identify key genes in the purine metabolism pathway, followed by validation of their expression levels and association with patient prognosis. Potential regulatory mechanisms were explored, and a prognostic model based on the key genes was constructed. Results: The purine metabolism pathway was significantly upregulated in the chemotherapy-resistant group, with IMPDH2 highly expressed and associated with poor prognosis in gastric cancer patients. Further analysis suggested that c-Myc may act as the upstream transcription factor of IMPDH2, while KRAS may regulate c-Myc via the MAPK pathway, indicating the existence of a c-Myc-IMPDH2-KRAS feedback regulatory loop. A prognostic model based on IMPDH2 and related genes effectively predicted the 5-year overall survival and disease-free survival rates of gastric cancer patients. Conclusion: This study identified IMPDH2 as a key player in gastric cancer chemotherapy resistance and proposed that it may promote purine metabolism reprogramming and chemotherapy resistance via the c-Myc-IMPDH2-KRAS feedback loop. The constructed prognostic model demonstrated good predictive power, offering new insights for precision therapy and personalized management of gastric cancer.
文章引用:邵运, 周连帮. 生信分析胃癌化疗耐药嘌呤代谢关键基因及预后关系[J]. 临床医学进展, 2025, 15(3): 1023-1034. https://doi.org/10.12677/acm.2025.153708

参考文献

[1] Smyth, E.C., Nilsson, M., Grabsch, H.I., van Grieken, N.C. and Lordick, F. (2020) Gastric Cancer. The Lancet, 396, 635-648. [Google Scholar] [CrossRef] [PubMed]
[2] 《胃癌中西医结合诊疗指南》标准化项目组. 胃癌中西医结合诊疗指南(2023年) [J]. 中国中西医结合杂志, 2024, 44(3): 261-272.
[3] 王立康, 韩澳迎, 张丽娜. 奥沙利铂在胃癌耐药性中的研究进展[J]. 广东化工, 2024, 51(15): 93-94, 89.
[4] 姚利昂, 胡泽平. 肿瘤代谢重编程与药物耐药性[J]. 中国医学前沿杂志(电子版), 2019, 11(2): 23-27.
[5] 邸宇琴, 丁宇烽, 王雄军. 肿瘤代谢重编程在化疗耐药与免疫治疗耐受中的研究进展[J]. 中国癌症防治杂志, 2022, 14(2):139-146.
[6] Allegrini, S., Camici, M., Garcia-Gil, M., Pesi, R. and Tozzi, M.G. (2024) Interplay between mTOR and Purine Metabolism Enzymes and Its Relevant Role in Cancer. International Journal of Molecular Sciences, 25, Article 6735. [Google Scholar] [CrossRef] [PubMed]
[7] Cao, K., Lyu, Y., Chen, J., He, C., Lyu, X., Zhang, Y., et al. (2023) Prognostic Implication of Plasma Metabolites in Gastric Cancer. International Journal of Molecular Sciences, 24, Article 12774. [Google Scholar] [CrossRef] [PubMed]
[8] De Vitto, H., Arachchige, D., Richardson, B. and French, J. (2021) The Intersection of Purine and Mitochondrial Metabolism in Cancer. Cells, 10, Article 2603. [Google Scholar] [CrossRef] [PubMed]
[9] Dumanskiy, Y.V., Stoliarova, O.Y., Syniachenko, О.V., Aliev, R.F., Iermolaeva, М.V. and Sokrut, О.P. (2023) Comparative Evaluation of Purine Dysmetabolism in Gastric and Pulmonary Adenocarcinomas. Experimental Oncology, 42, 220-223. [Google Scholar] [CrossRef] [PubMed]
[10] Zhang, Q., Cui, K., Yang, X., He, Q., Yu, J., Yang, L., et al. (2023) C‐Myc-IMPDH1/2 Axis Promotes Tumourigenesis by Regulating GTP Metabolic Reprogramming. Clinical and Translational Medicine, 13, e1164. [Google Scholar] [CrossRef] [PubMed]
[11] Ala, M. (2022) Target C-Myc to Treat Pancreatic Cancer. Cancer Biology & Therapy, 23, 34-50. [Google Scholar] [CrossRef] [PubMed]
[12] Ding, X., Cai, X., Wang, Q., Liu, N., Zhong, W., Xi, X., et al. (2024) Vitexicarpin Suppresses Malignant Progression of Colorectal Cancer through Affecting C-Myc Ubiquitination by Targeting Impdh2. Phytomedicine, 132, Article 155833. [Google Scholar] [CrossRef] [PubMed]
[13] Ye, W., Huang, L., Yang, X., Wan, S., Gan, W., Yang, Y., et al. (2024) TRIM21 Induces Selective Autophagic Degradation of C-Myc and Sensitizes Regorafenib Therapy in Colorectal Cancer. Proceedings of the National Academy of Sciences, 121, e2406936121. [Google Scholar] [CrossRef] [PubMed]
[14] Chang, Y., Chen, Q., Li, H., Xu, J., Tan, M., Xiong, X., et al. (2024) The UBE2F-CRL5ASB11-DIRAS2 Axis Is an Oncogene and Tumor Suppressor Cascade in Pancreatic Cancer Cells. Developmental Cell, 59, 1317-1332.e5. [Google Scholar] [CrossRef] [PubMed]
[15] Peñuelas, S., Noé, V. and Ciudad, C.J. (2005) Modulation of IMPDH2, Survivin, Topoisomerase I and Vimentin Increases Sensitivity to Methotrexate in HT29 Human Colon Cancer Cells. The FEBS Journal, 272, 696-710. [Google Scholar] [CrossRef] [PubMed]
[16] Peñuelas, S., Noé, V., Morales, R., et al. (2005) Sensitization of Human Erythroleukemia K562 Cells Resistant to Methotrexate by Inhibiting IMPDH. Medical Science Monitor, 11, Br6-12.
[17] Hong, L., Qiao, T., Han, Y., Han, S., Zhang, X., Lin, T., et al. (2006) ZNRD1 Mediates Resistance of Gastric Cancer Cells to Methotrexate by Regulation of IMPDH2 and Bcl-2. Biochemistry and Cell Biology, 84, 199-206. [Google Scholar] [CrossRef] [PubMed]
[18] Duan, S., Huang, W., Liu, X., Liu, X., Chen, N., Xu, Q., et al. (2018) IMPDH2 Promotes Colorectal Cancer Progression through Activation of the PI3K/AKT/mTOR and PI3K/AKT/FOXO1 Signaling Pathways. Journal of Experimental & Clinical Cancer Research, 37, Article No. 304. [Google Scholar] [CrossRef] [PubMed]
[19] Zou, J., Han, Z., Zhou, L., Cai, C., Luo, H., Huang, Y., et al. (2014) Elevated Expression of IMPDH2 Is Associated with Progression of Kidney and Bladder Cancer. Medical Oncology, 32, Article No. 373. [Google Scholar] [CrossRef] [PubMed]
[20] Pareek, V., Pedley, A.M. and Benkovic, S.J. (2020) Human De Novo Purine Biosynthesis. Critical Reviews in Biochemistry and Molecular Biology, 56, 1-16. [Google Scholar] [CrossRef] [PubMed]
[21] Kofuji, S. and Sasaki, A.T. (2020) GTP Metabolic Reprogramming by IMPDH2: Unlocking Cancer Cells’ Fuelling Mechanism. The Journal of Biochemistry, 168, 319-328. [Google Scholar] [CrossRef] [PubMed]
[22] Kim, H.J., Lee, H.N., Jeong, M.S. and Jang, S.B. (2021) Oncogenic KRAS: Signaling and Drug Resistance. Cancers, 13, Article 5599. [Google Scholar] [CrossRef] [PubMed]
[23] Zhou, W., Zhao, Z., Lin, A., Yang, J.Z., Xu, J., Wilder-Romans, K., et al. (2023) GTP Signaling Links Metabolism, DNA Repair, and Responses to Genotoxic Stress. Cancer Discovery, 14, 158-175. [Google Scholar] [CrossRef] [PubMed]
[24] Burton, E.M., Liang, J.H., Mitra, B., et al. (2024) Epstein-Barr Virus Latent Membrane Protein 1 Subverts IMPDH Pathways to Drive B-Cell Oncometabolism. Preprint. [Google Scholar] [CrossRef] [PubMed]
[25] Zerhouni, M., Martin, A.R., Furstoss, N., Gutierrez, V.S., Jaune, E., Tekaya, N., et al. (2021) Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma. Cancer Research, 81, 3806-3821. [Google Scholar] [CrossRef] [PubMed]