双靶E3连接酶配体:克服耐药新出路
Dual Target E3 Ligase Ligands: A New Way to Overcome Drug Resistance
摘要: 由与E3泛素连接酶配体连接的蛋白质靶向配体组成的蛋白水解靶向嵌合体(PROTAC)的靶向蛋白质降解已成为一种通过蛋白酶体介导的降解致病蛋白质的强大治疗方式。目前对于PROTAC的研究如火如荼,但在应用方面PROTAC仍具有较大限制,例如肿瘤细胞的耐药性。联合用药是目前最广泛使用的规避耐药性方式,但是联合用药带来了新的问题。相较之下,双靶药物则具有巨大前景。双靶药物通过同时抑制多个靶标蛋白并产生协同抗病毒作用来对抗病毒感染。肿瘤的耐药性突变改变的是E3连接酶,如果能够设计合成双靶E3连接酶配体的PROTAC,哪怕其中一端的E3连接酶失活,另一端对应的E3连接酶仍能发挥作用。
Abstract: Targeted protein degradation by proteolytic targeting chimera (protac), which consists of protein targeting ligands linked to E3 ubiquitin ligase ligands, has become a powerful therapeutic modality to degrade pathogenic proteins through proteasome-mediated degradation. At present, the research on protac is in full swing, but there are still great limitations in the application of protac, such as the drug resistance of tumor cells. Drug combination is the most widely used way to avoid drug resistance, but it has brought new problems. In contrast, dual-target drugs have great prospects. Dual target drugs fight against viral infection by simultaneously inhibiting multiple target proteins and producing synergistic antiviral effects. The drug resistance mutation of tumor is targeted at the E3 ligase. If protacs with dual target E3 ligase ligands can be designed and synthesized, even if the E3 ligase at one end is inactivated, the corresponding E3 ligase at the other end can still play a role.
文章引用:潘相奕. 双靶E3连接酶配体:克服耐药新出路[J]. 药物化学, 2026, 14(1): 53-63. https://doi.org/10.12677/hjmce.2026.141006

参考文献

[1] Nandi, D., Tahiliani, P., Kumar, A. and Chandu, D. (2006) The Ubiquitin-Proteasome System. Journal of Biosciences, 31, 137-155. [Google Scholar] [CrossRef] [PubMed]
[2] Bond, M.J. and Crews, C.M. (2021) Proteolysis Targeting Chimeras (PROTACs) Come of Age: Entering the Third Decade of Targeted Protein Degradation. RSC Chemical Biology, 2, 725-742. [Google Scholar] [CrossRef] [PubMed]
[3] Hershko, A., Heller, H., Elias, S. and Ciechanover, A. (1983) Components of Ubiquitin-Protein Ligase System. Resolution, Affinity Purification, and Role in Protein Breakdown. Journal of Biological Chemistry, 258, 8206-8214. [Google Scholar] [CrossRef] [PubMed]
[4] Wertz, I.E. and Wang, X. (2019) From Discovery to Bedside: Targeting the Ubiquitin System. Cell Chemical Biology, 26, 156-177. [Google Scholar] [CrossRef] [PubMed]
[5] Michaelides, I.N. and Collie, G.W. (2023) E3 Ligases Meet Their Match: Fragment-Based Approaches to Discover New E3 Ligands and to Unravel E3 Biology. Journal of Medicinal Chemistry, 66, 3173-3194. [Google Scholar] [CrossRef] [PubMed]
[6] Jiang, H., Xiong, H., Gu, S. and Wang, M. (2023) E3 Ligase Ligand Optimization of Clinical PROTACs. Frontiers in Chemistry, 11, Article ID: 1098331. [Google Scholar] [CrossRef] [PubMed]
[7] Ito, T., Ando, H., Suzuki, T., Ogura, T., Hotta, K., Imamura, Y., et al. (2010) Identification of a Primary Target of Thalidomide Teratogenicity. Science, 327, 1345-1350. [Google Scholar] [CrossRef] [PubMed]
[8] Zhu, Y.X., Braggio, E., Shi, C., Bruins, L.A., Schmidt, J.E., Van Wier, S., et al. (2011) Cereblon Expression Is Required for the Antimyeloma Activity of Lenalidomide and Pomalidomide. Blood, 118, 4771-4779. [Google Scholar] [CrossRef] [PubMed]
[9] Takwale, A.D., Jo, S., Jeon, Y.U., Kim, H.S., Shin, C.H., Lee, H.K., et al. (2020) Design and Characterization of Cereblon-Mediated Androgen Receptor Proteolysis-Targeting Chimeras. European Journal of Medicinal Chemistry, 208, Article 112769. [Google Scholar] [CrossRef] [PubMed]
[10] Han, T., Goralski, M., Gaskill, N., Capota, E., Kim, J., Ting, T.C., et al. (2017) Anticancer Sulfonamides Target Splicing by Inducing RBM39 Degradation via Recruitment to Dcaf15. Science, 356, eaal3755. [Google Scholar] [CrossRef] [PubMed]
[11] Zhang, X., Crowley, V.M., Wucherpfennig, T.G., Dix, M.M. and Cravatt, B.F. (2019) Electrophilic PROTACs that Degrade Nuclear Proteins by Engaging Dcaf16. Nature Chemical Biology, 15, 737-746. [Google Scholar] [CrossRef] [PubMed]
[12] Zhang, X., Luukkonen, L.M., Eissler, C.L., Crowley, V.M., Yamashita, Y., Schafroth, M.A., et al. (2021) DCAF11 Supports Targeted Protein Degradation by Electrophilic Proteolysis-Targeting Chimeras. Journal of the American Chemical Society, 143, 5141-5149. [Google Scholar] [CrossRef] [PubMed]
[13] Buckley, D.L., Gustafson, J.L., Van Molle, I., Roth, A.G., Tae, H.S., Gareiss, P.C., et al. (2012) Small‐Molecule Inhibitors of the Interaction between the E3 Ligase VHL and HIF1α. Angewandte Chemie International Edition, 51, 11463-11467. [Google Scholar] [CrossRef] [PubMed]
[14] Zoppi, V., Hughes, S.J., Maniaci, C., Testa, A., Gmaschitz, T., Wieshofer, C., et al. (2019) Iterative Design and Optimization of Initially Inactive Proteolysis Targeting Chimeras (PROTACs) Identify VZ185 as a Potent, Fast, and Selective Von Hippel-Lindau (VHL) Based Dual Degrader Probe of BRD9 and Brd7. Journal of Medicinal Chemistry, 62, 699-726. [Google Scholar] [CrossRef] [PubMed]
[15] Lucas, X., Van Molle, I. and Ciulli, A. (2018) Surface Probing by Fragment-Based Screening and Computational Methods Identifies Ligandable Pockets on the Von Hippel-Lindau (VHL) E3 Ubiquitin Ligase. Journal of Medicinal Chemistry, 61, 7387-7393. [Google Scholar] [CrossRef] [PubMed]
[16] Burslem, G.M. and Crews, C.M. (2020) Proteolysis-Targeting Chimeras as Therapeutics and Tools for Biological Discovery. Cell, 181, 102-114. [Google Scholar] [CrossRef] [PubMed]
[17] Nowak, R.P., DeAngelo, S.L., Buckley, D., He, Z., Donovan, K.A., An, J., et al. (2018) Plasticity in Binding Confers Selectivity in Ligand-Induced Protein Degradation. Nature Chemical Biology, 14, 706-714. [Google Scholar] [CrossRef] [PubMed]
[18] Bondeson, D.P., Smith, B.E., Burslem, G.M., Buhimschi, A.D., Hines, J., Jaime-Figueroa, S., et al. (2018) Lessons in PROTAC Design from Selective Degradation with a Promiscuous Warhead. Cell Chemical Biology, 25, 78-87.e5. [Google Scholar] [CrossRef] [PubMed]
[19] Sakamoto, K.M., Kim, K.B., Kumagai, A., Mercurio, F., Crews, C.M. and Deshaies, R.J. (2001) PROTACs: Chimeric Molecules That Target Proteins to the Skp1-Cullin-F Box Complex for Ubiquitination and Degradation. Proceedings of the National Academy of Sciences, 98, 8554-8559. [Google Scholar] [CrossRef] [PubMed]
[20] Flanagan, J.J. and Neklesa, T.K. (2019) Targeting Nuclear Receptors with PROTAC Degraders. Molecular and Cellular Endocrinology, 493, Article 110452. [Google Scholar] [CrossRef] [PubMed]
[21] Sakamoto, K.M., Kim, K.B., Verma, R., Ransick, A., Stein, B., Crews, C.M., et al. (2003) Development of PROTACs to Target Cancer-Promoting Proteins for Ubiquitination and Degradation. Molecular & Cellular Proteomics, 2, 1350-1358. [Google Scholar] [CrossRef] [PubMed]
[22] Vassilev, L.T., Vu, B.T., Graves, B., Carvajal, D., Podlaski, F., Filipovic, Z., et al. (2004) In Vivo Activation of the P53 Pathway by Small-Molecule Antagonists of Mdm2. Science, 303, 844-848. [Google Scholar] [CrossRef] [PubMed]
[23] Lu, J., Qian, Y., Altieri, M., Dong, H., Wang, J., Raina, K., et al. (2015) Hijacking the E3 Ubiquitin Ligase Cereblon to Efficiently Target BRD4. Chemistry & Biology, 22, 755-763. [Google Scholar] [CrossRef] [PubMed]
[24] He, S., Ma, J., Fang, Y., Liu, Y., Wu, S., Dong, G., et al. (2021) Homo-PROTAC Mediated Suicide of MDM2 to Treat Non-Small Cell Lung Cancer. Acta Pharmaceutica Sinica B, 11, 1617-1628. [Google Scholar] [CrossRef] [PubMed]
[25] Han, X., Wang, C., Qin, C., Xiang, W., Fernandez-Salas, E., Yang, C., et al. (2019) Discovery of ARD-69 as a Highly Potent Proteolysis Targeting Chimera (PROTAC) Degrader of Androgen Receptor (AR) for the Treatment of Prostate Cancer. Journal of Medicinal Chemistry, 62, 941-964. [Google Scholar] [CrossRef] [PubMed]
[26] Han, X., Zhao, L., Xiang, W., Qin, C., Miao, B., Xu, T., et al. (2019) Discovery of Highly Potent and Efficient PROTAC Degraders of Androgen Receptor (AR) by Employing Weak Binding Affinity VHL E3 Ligase Ligands. Journal of Medicinal Chemistry, 62, 11218-11231. [Google Scholar] [CrossRef] [PubMed]
[27] Burke, M.R., Smith, A.R. and Zheng, G. (2022) Overcoming Cancer Drug Resistance Utilizing PROTAC Technology. Frontiers in Cell and Developmental Biology, 10, Article ID: 872729. [Google Scholar] [CrossRef] [PubMed]
[28] Ward, R.A., Fawell, S., Floc’h, N., Flemington, V., McKerrecher, D. and Smith, P.D. (2021) Challenges and Opportunities in Cancer Drug Resistance. Chemical Reviews, 121, 3297-3351. [Google Scholar] [CrossRef] [PubMed]
[29] Zhang, W., Li, P., Sun, S., Jia, C., Yang, N., Zhuang, X., et al. (2022) Discovery of Highly Potent and Selective CRBN-Recruiting EGFRL858R/T790M Degraders in Vivo. European Journal of Medicinal Chemistry, 238, Article 114509. [Google Scholar] [CrossRef] [PubMed]
[30] Wolf, G., Craigon, C., Teoh, S.T., Essletzbichler, P., Onstein, S., Cassidy, D., et al. (2025) The Efflux Pump ABCC1/MRP1 Constitutively Restricts PROTAC Sensitivity in Cancer Cells. Cell Chemical Biology, 32, 291-306.e6. [Google Scholar] [CrossRef] [PubMed]
[31] Zhang, L., Riley-Gillis, B., Vijay, P. and Shen, Y. (2019) Acquired Resistance to Bet-PROTACs (Proteolysis-Targeting Chimeras) Caused by Genomic Alterations in Core Components of E3 Ligase Complexes. Molecular Cancer Therapeutics, 18, 1302-1311. [Google Scholar] [CrossRef] [PubMed]
[32] Delmore, J.E., Issa, G.C., Lemieux, M.E., Rahl, P.B., Shi, J., Jacobs, H.M., et al. (2011) BET Bromodomain Inhibition as a Therapeutic Strategy to Target C-Myc. Cell, 146, 904-917. [Google Scholar] [CrossRef] [PubMed]
[33] Kortüm, K.M., Mai, E.K., Hanafiah, N.H., Shi, C., Zhu, Y., Bruins, L., et al. (2016) Targeted Sequencing of Refractory Myeloma Reveals a High Incidence of Mutations in CRBN and Ras Pathway Genes. Blood, 128, 1226-1233. [Google Scholar] [CrossRef] [PubMed]
[34] Barrio, S., Munawar, U., Zhu, Y.X., Giesen, N., Shi, C., Viá, M.D., et al. (2020) IKZF1/3 and CRL4crbn E3 Ubiquitin Ligase Mutations and Resistance to Immunomodulatory Drugs in Multiple Myeloma. Haematologica, 105, e237-e241. [Google Scholar] [CrossRef] [PubMed]
[35] Gooding, S., Ansari-Pour, N., Towfic, F., Ortiz Estévez, M., Chamberlain, P.P., Tsai, K., et al. (2021) Multiple Cereblon Genetic Changes Are Associated with Acquired Resistance to Lenalidomide or Pomalidomide in Multiple Myeloma. Blood, 137, 232-237. [Google Scholar] [CrossRef] [PubMed]
[36] Latif, F., Tory, K., Gnarra, J., Yao, M., Duh, F., Orcutt, M.L., et al. (1993) Identification of the Von Hippel-Lindau Disease Tumor Suppressor Gene. Science, 260, 1317-1320. [Google Scholar] [CrossRef] [PubMed]
[37] Hanzl, A., Casement, R., Imrichova, H., Hughes, S.J., Barone, E., Testa, A., et al. (2023) Functional E3 Ligase Hotspots and Resistance Mechanisms to Small-Molecule Degraders. Nature Chemical Biology, 19, 323-333. [Google Scholar] [CrossRef] [PubMed]
[38] Mayor-Ruiz, C., Jaeger, M.G., Bauer, S., Brand, M., Sin, C., Hanzl, A., et al. (2019) Plasticity of the Cullin-Ring Ligase Repertoire Shapes Sensitivity to Ligand-Induced Protein Degradation. Molecular Cell, 75, 849-858.e8. [Google Scholar] [CrossRef] [PubMed]
[39] Aldea, M., Andre, F., Marabelle, A., Dogan, S., Barlesi, F. and Soria, J. (2021) Overcoming Resistance to Tumor-Targeted and Immune-Targeted Therapies. Cancer Discovery, 11, 874-899. [Google Scholar] [CrossRef] [PubMed]
[40] Kobayashi, S., Boggon, T.J., Dayaram, T., Jänne, P.A., Kocher, O., Meyerson, M., et al. (2005) EGFR Mutation and Resistance of Non-Small-Cell Lung Cancer to Gefitinib. New England Journal of Medicine, 352, 786-792. [Google Scholar] [CrossRef] [PubMed]
[41] Nagpure, N.R. and Patel, H.M. (2025) Overcoming Triple Mutant EGFR-Tyrosine Kinase Barriers in the Therapeutics of Non-Small Cell Lung Cancer: A Patent Review on Fourth-Generation Inhibitors (2017-2024). Expert Opinion on Therapeutic Patents, 35, 963-982. [Google Scholar] [CrossRef] [PubMed]
[42] Huang, X., Zhang, G., Tang, T., Gao, X. and Liang, T. (2022) One Shoot, Three Birds: Targeting NEK2 Orchestrates Chemoradiotherapy, Targeted Therapy, and Immunotherapy in Cancer Treatment. Biochimica et Biophysica Acta (BBA)-Reviews on Cancer, 1877, Article 188696. [Google Scholar] [CrossRef] [PubMed]
[43] Huang, Q., Li, Y., Huang, Y., Wu, J., Bao, W., Xue, C., et al. (2025) Advances in Molecular Pathology and Therapy of Non-Small Cell Lung Cancer. Signal Transduction and Targeted Therapy, 10, Article No. 186. [Google Scholar] [CrossRef] [PubMed]
[44] Li, E., Huang, X., Zhang, G. and Liang, T. (2021) Combinational Blockade of MET and PD-L1 Improves Pancreatic Cancer Immunotherapeutic Efficacy. Journal of Experimental & Clinical Cancer Research, 40, Article No. 279. [Google Scholar] [CrossRef] [PubMed]
[45] Wang, X., Lu, Y., Chen, S., Zhu, Z., Fu, Y., Zhang, J., et al. (2024) Discovery of a Prominent Dual-Target DDR1/EGFR Inhibitor Aimed DDR1/EGFR-Positive NSCLC. Bioorganic Chemistry, 149, Article 107500. [Google Scholar] [CrossRef] [PubMed]
[46] He, J. and Tam, K.Y. (2024) Dual-Target Inhibitors of Cholinesterase and Gsk-3β to Modulate Alzheimer’s Disease. Drug Discovery Today, 29, Article 103914. [Google Scholar] [CrossRef] [PubMed]
[47] Ramsay, R.R., Popovic‐Nikolic, M.R., Nikolic, K., Uliassi, E. and Bolognesi, M.L. (2018) A Perspective on Multi‐Target Drug Discovery and Design for Complex Diseases. Clinical and Translational Medicine, 7, e3. [Google Scholar] [CrossRef] [PubMed]
[48] Santos, R., Ursu, O., Gaulton, A., Bento, A.P., Donadi, R.S., Bologa, C.G., et al. (2016) A Comprehensive Map of Molecular Drug Targets. Nature Reviews Drug Discovery, 16, 19-34. [Google Scholar] [CrossRef] [PubMed]
[49] Zięba, A., Stępnicki, P., Matosiuk, D. and Kaczor, A.A. (2022) What Are the Challenges with Multi-Targeted Drug Design for Complex Diseases? Expert Opinion on Drug Discovery, 17, 673-683. [Google Scholar] [CrossRef] [PubMed]
[50] Xin, L., Wang, C., Cheng, Y., Wang, H., Guo, X., Deng, X., et al. (2024) Discovery of Novel Erα and Aromatase Dual-Targeting PROTAC Degraders to Overcome Endocrine-Resistant Breast Cancer. Journal of Medicinal Chemistry, 67, 8913-8931. [Google Scholar] [CrossRef] [PubMed]
[51] Zheng, M., Huo, J., Gu, X., Wang, Y., Wu, C., Zhang, Q., et al. (2021) Rational Design and Synthesis of Novel Dual PROTACs for Simultaneous Degradation of EGFR and PARP. Journal of Medicinal Chemistry, 64, 7839-7852. [Google Scholar] [CrossRef] [PubMed]
[52] Teng, M., Jiang, J., He, Z., Kwiatkowski, N.P., Donovan, K.A., Mills, C.E., et al. (2020) Development of CDK2 and CDK5 Dual Degrader Tmx‐2172. Angewandte Chemie International Edition, 59, 13865-13870. [Google Scholar] [CrossRef] [PubMed]
[53] Liu, J., Liu, Y., Tang, J., Gong, Q., Yan, G., Fan, H., et al. (2024) Recent Advances in Dual PROTACs Degrader Strategies for Disease Treatment. European Journal of Medicinal Chemistry, 279, Article 116901. [Google Scholar] [CrossRef] [PubMed]
[54] Zhou, F., Chen, L., Cao, C., Yu, J., Luo, X., Zhou, P., et al. (2020) Development of Selective Mono or Dual PROTAC Degrader Probe of CDK Isoforms. European Journal of Medicinal Chemistry, 187, Article 111952. [Google Scholar] [CrossRef] [PubMed]
[55] Xiao, Y., Hale, S., Awasthee, N., Meng, C., Zhang, X., Liu, Y., et al. (2023) HDAC3 and HDAC8 PROTAC Dual Degrader Reveals Roles of Histone Acetylation in Gene Regulation. Cell Chemical Biology, 30, 1421-1435.e12. [Google Scholar] [CrossRef] [PubMed]
[56] Lv, D., Pal, P., Liu, X., Jia, Y., Thummuri, D., Zhang, P., et al. (2021) Development of a BCL-XL and BCL-2 Dual Degrader with Improved Anti-Leukemic Activity. Nature Communications, 12, Article No. 6896. [Google Scholar] [CrossRef] [PubMed]
[57] Huang, Y., Yokoe, H., Kaiho-Soma, A., Takahashi, K., Hirasawa, Y., Morita, H., et al. (2022) Design, Synthesis, and Evaluation of Trivalent PROTACs Having a Functionalization Site with Controlled Orientation. Bioconjugate Chemistry, 33, 142-151. [Google Scholar] [CrossRef] [PubMed]
[58] Imaide, S., Riching, K.M., Makukhin, N., Vetma, V., Whitworth, C., Hughes, S.J., et al. (2021) Trivalent PROTACs Enhance Protein Degradation via Combined Avidity and Cooperativity. Nature Chemical Biology, 17, 1157-1167. [Google Scholar] [CrossRef] [PubMed]
[59] Chen, Y., Xia, Z., Suwal, U., Rappu, P., Heino, J., De Wever, O., et al. (2024) Dual-Ligand PROTACS Mediate Superior Target Protein Degradation in Vitro and Therapeutic Efficacy in Vivo. Chemical Science, 15, 17691-17701. [Google Scholar] [CrossRef] [PubMed]
[60] Li, J., Chen, X., Lu, A. and Liang, C. (2023) Targeted Protein Degradation in Cancers: Orthodox PROTACs and Beyond. The Innovation, 4, Article 100413. [Google Scholar] [CrossRef] [PubMed]
[61] Wang, S., Li, Y., Huang, S., Wu, S., Gao, L., Sun, Q., et al. (2021) Discovery of Potent and Novel Dual PARP/BRD4 Inhibitors for Efficient Treatment of Pancreatic Cancer. Journal of Medicinal Chemistry, 64, 17413-17435. [Google Scholar] [CrossRef] [PubMed]
[62] Zhang, J., Yang, C., Tang, P., Chen, J., Zhang, D., Li, Y., et al. (2022) Discovery of 4-Hydroxyquinazoline Derivatives as Small Molecular BET/PARP1 Inhibitors That Induce Defective Homologous Recombination and Lead to Synthetic Lethality for Triple-Negative Breast Cancer Therapy. Journal of Medicinal Chemistry, 65, 6803-6825. [Google Scholar] [CrossRef] [PubMed]